BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931152

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G14410.1 | Symbols: ATWHY1, PTAC1, WHY1 | ssDNA-binding tran...   139    1e-32


> AT1G14410.1 | Symbols: ATWHY1, PTAC1, WHY1 | ssDNA-binding transcriptional 
regulator | chr1:4929123-4930904 REVERSE LENGTH=1115
Length=1115

 Score =  139 bits (75),  Expect = 1e-32
 Identities = 86/91 (95%), Gaps = 2/91 (2%)
 Strand=Plus/Plus

Query  35   AGCTTTCAAGTTGTCAAAAGATGGTTTTCT-ATTGCTCCAATTTGCTCCTTCTGCTGGTG  93
            ||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||
Sbjct  421  AGCTTTCAAGTTGTCAAAAGATGGTTT-CTTATTGCTCCAGTTTGCTCCTTCTGCTGGTG  479

Query  94   TACGACAATATAATTGGGGCAAGAAACAGGT  124
            ||||||||||| ||||| |||||||||||||
Sbjct  480  TACGACAATATGATTGGAGCAAGAAACAGGT  510



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12114527509


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5