BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931157
Length=1190
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14260.1 | Symbols: PIP | proline iminopeptidase | chr2:6041... 1751 0.0
> AT2G14260.1 | Symbols: PIP | proline iminopeptidase | chr2:6041253-6043974
REVERSE LENGTH=1436
Length=1436
Score = 1751 bits (948), Expect = 0.0
Identities = 1115/1193 (93%), Gaps = 22/1193 (2%)
Strand=Plus/Plus
Query 6 AAACGGGTCAAATACTATGAAATTGGTTCTTGCATCATCCTCTTTGGCCCCTTGCTTCTG 65
||||||||||||||||||||| ||| | |||||||| | |||||||||||||||||||||
Sbjct 90 AAACGGGTCAAATACTATGAACTTGATCCTTGCATCGTTCTCTTTGGCCCCTTGCTTCTG 149
Query 66 TGTTCGATTCTTTCCACCAAACCATAACAATCTCAATC-CTTCATTCTCAGGGCAACGAA 124
||||||||||||||| ||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 150 TGTTCGATTCTTTCCTTCAAACCATAACAATCTCAATCTCTT-ATTCCCAGGGCAACGAA 208
Query 125 AGATT-AAATTACGCGCGATTTCCGTTAGTTGCGGTATGAGTGAGGTGTTGAAGAGTGAT 183
||||| || ||| | || || | | |||| ||||||||||||||||||||||
Sbjct 209 AGATTCAAGTTA-----G--TTGCG---G-T--GGTAAGAGTGAGGTGTTGAAGAGTGAT 255
Query 184 TTAATGGAA-C-C-TGAAGCAGAAACGTTGGTGAACAAGAGAAATCTTTATGCTCCTATT 240
||||||| | | ||||||||||||||| ||||||||||||| ||||||||||| |||
Sbjct 256 ACAATGGAACCTCATGAAGCAGAAACGTTTGTGAACAAGAGAACCCTTTATGCTCCCATT 315
Query 241 GAGCCATATAGCACTGGAAATTTAAAGGTTTCAGATGTTCACACACTCTACTGGGAGCAA 300
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 316 GAGCCATATAGCAGTGGAAATTTAAAGGTTTCAGATGTTCACACTCTCTACTGGGAGCAA 375
Query 301 TCAGGAAAACCCGATGGACACCCAGTTGTTTTTCTTCACGGAGGGCCGGGAGGAGGGACA 360
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 376 TCAGGCAAACCCGATGGACACCCGGTTGTTTTTCTTCACGGCGGGCCGGGAGGAGGGACG 435
Query 361 GCTCCTGGTAATAGGAGAGTCTTCGATCCTGAGTTTTATCGCATTATTCTGTTTGACCAG 420
|||||| ||||||||||| |||||||||| ||||||||||| ||| |||||||||| |||
Sbjct 436 GCTCCTAGTAATAGGAGATTCTTCGATCCGGAGTTTTATCGGATTGTTCTGTTTGATCAG 495
Query 421 AGAGGTGCAGGAAAGAGTACACCACATGCTTGCTTGGAGGAAAACACCACATGGGACCTT 480
|||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 496 AGAGGTGCGGGGAAGAGTACACCGCATGCTTGTTTGGAGGAAAACACCACATGGGACCTT 555
Query 481 GTAAATGATATTGAAAAACTAAGAGAACATTTGAAAATACCGGAATGGCTGGTTTTTGGT 540
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 556 GTGAATGATATTGAAAAACTAAGAGAACATTTGAAAATACCTGAATGGCTGGTTTTTGGA 615
Query 541 GGATCATGGGGAAGCACTCTAGCACTTGCGTACAGCCAGTCTCACCCTGACAAGGTTACT 600
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 616 GGATCATGGGGAAGCACTCTAGCTCTTGCATACAGTCAGTCTCACCCTGACAAGGTTACT 675
Query 601 GGTTTAGTCCTTAGAGGGATCTTTTTGTTGCGTAAAAAGGAGATTGATTGGTTTTACGAG 660
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 676 GGTTTGGTCCTTAGAGGGATCTTTTTGTTGCGTAAAAAGGAGATTGACTGGTTTTACGAG 735
Query 661 GGTGGTGCTGCTGCTATATACCCTGATGCTTGGGAGGAGTTCAGAGATCTTATTCCAGAA 720
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GGCGGTGCTGCTGCTATTTACCCTGATGCTTGGGAGGAGTTCAGAGATCTTATTCCAGAA 795
Query 721 AACGAGAGA-G--GTAGCCTTGTGGATGCATATCACAAAAGATTGAATTCTGATGATCTG 777
||||||||| | ||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 796 AACGAGAGAGGTAGTAGCCTTGTGGACGCGTATCACAAAAGATTGAATTCTGATGATCTG 855
Query 778 GAAACTCAATATGCAGCTGCAAGAGCTTGGACTAAATGGGAAATGATGACTGCTTATCTT 837
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GAAATTCAATACGCAGCTGCAAGAGCTTGGACTAAATGGGAAATGATGACTGCTTATCTT 915
Query 838 CGTCCAAATCTTGAAAACGTTCAAAAGGCAGAGGATGATAAATTTTCTTTGGCGTTTGCA 897
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 916 CGTCCAAATCTTGAAAACGTTCAAAAGGCAGAGGATGATAAATTTTCATTGGCGTTTGCA 975
Query 898 AGGATTGAAAATCACTACTTTGTTAACAAAGGTTTCTTTCCATCGGATTCATACTTGCTA 957
|||||||||||||||||||||||||||||||||||||| || ||||| ||| ||||||||
Sbjct 976 AGGATTGAAAATCACTACTTTGTTAACAAAGGTTTCTTCCCGTCGGACTCACACTTGCTA 1035
Query 958 GACAATGTTGATAAAATACGACATATCAAGACCACCATTGTTCAGGGAAGGTATGACGTA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 GACAATGTTGATAAAATACGACATATCAAGACCACCATTGTTCAGGGAAGGTATGACGTA 1095
Query 1018 TGCTGTCCTATGATGTCTGCTTGGGATCTGCACAAAGCATGGCCAGAGGCAGAACTCAAG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 TGCTGTCCTATGATGTCTGCTTGGGATCTGCACAAAGCATGGCCAGAGGCAGAACTCAAG 1155
Query 1078 ATTGTTTATGATGCTGGGCACTCGGCAAATGAGCCAGGAATAGCAGCGGAACTCGTGGTT 1137
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1156 ATTGTTTATGATGCTGGGCACTCGGCAAATGAGCCAGGAATATCAGCGGAACTCGTGGTT 1215
Query 1138 GCCAATGAAAAGATGAAAGCACTTATGAGATAAAGTATTTGATGGAAAGAAAG 1190
||||||||||||||||||||||||||| ||| ||||||||||||||| |||||
Sbjct 1216 GCCAATGAAAAGATGAAAGCACTTATGGGATGAAGTATTTGATGGAATGAAAG 1268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58433434380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5