BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931158

Length=311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G30220.2 | Symbols: RUXF | small nuclear ribonucleoprotein F...   381    2e-105
  AT2G14285.1 | Symbols:  | Small nuclear ribonucleoprotein famil...   342    1e-93 


> AT4G30220.2 | Symbols: RUXF | small nuclear ribonucleoprotein 
F | chr4:14802960-14804358 REVERSE LENGTH=530
Length=530

 Score =  381 bits (206),  Expect = 2e-105
 Identities = 240/257 (93%), Gaps = 0/257 (0%)
 Strand=Plus/Plus

Query  36   GTTAACCCGAAACCATTCTTGAACAACTTGACCGGGAAGACGGTTATCGTTAAGCTTAAA  95
            ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct  139  GTTAACCCGAAACCATTCTTGAACAACTTGACCGGCAAGACTGTTATCGTCAAGCTTAAA  198

Query  96   TGGGGAATGGAATACAAAGGTTTTCTCGCTTCTGTTGACTCCTACATGAACTTGCAGCTG  155
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  199  TGGGGAATGGAATACAAAGGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAGCTG  258

Query  156  GGAAACACCGAGGAATACATCGATGGGCAATTGACAGGAAACCTTGGAGAGATCTTGATC  215
            ||||||||||| ||||| || ||||| ||||||||||| |||||||||||||||||||||
Sbjct  259  GGAAACACCGAAGAATATATTGATGGACAATTGACAGGGAACCTTGGAGAGATCTTGATC  318

Query  216  AGATGCAACAACGTCTTGTATGTCCGAGGCATGCCAGAAGATGAAGAACTTGAAGATGCT  275
            || |||||||| || ||||||||||| ||  |||||||||||||||| |||||||| |||
Sbjct  319  AGGTGCAACAATGTTTTGTATGTCCGTGGTGTGCCAGAAGATGAAGAGCTTGAAGACGCT  378

Query  276  GATCAAGACTAACCTGT  292
            |||||||||||||||||
Sbjct  379  GATCAAGACTAACCTGT  395


> AT2G14285.1 | Symbols:  | Small nuclear ribonucleoprotein family 
protein | chr2:6052332-6053994 REVERSE LENGTH=580
Length=580

 Score =  342 bits (185),  Expect = 1e-93
 Identities = 203/212 (96%), Gaps = 0/212 (0%)
 Strand=Plus/Plus

Query  88   AGCTTAAATGGGGAATGGAATACAAAGGTTTTCTCGCTTCTGTTGACTCCTACATGAACT  147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  101  AGCTTAAATGGGGAATGGAATACAAAGGTTTTCTCGCTTCTGTTGACTCCTACATGAACT  160

Query  148  TGCAGCTGGGAAACACCGAGGAATACATCGATGGGCAATTGACAGGAAACCTTGGAGAGA  207
            ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  161  TGCAGCTAGGAAACACCGAGGAATACATTGATGGGCAATTGACAGGAAACCTTGGAGAGA  220

Query  208  TCTTGATCAGATGCAACAACGTCTTGTATGTCCGAGGCATGCCAGAAGATGAAGAACTTG  267
            | ||||||||||||||||||||||||||||| || ||  ||||||||||||||||||| |
Sbjct  221  TTTTGATCAGATGCAACAACGTCTTGTATGTTCGTGGTGTGCCAGAAGATGAAGAACTCG  280

Query  268  AAGATGCTGATCAAGACTAACCTGTGCTGATG  299
            ||||||||||||||||||||| ||||||||||
Sbjct  281  AAGATGCTGATCAAGACTAACATGTGCTGATG  312



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14426843963


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5