BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931160

Length=538
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25300.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: F-box dom...   106    2e-22


> AT5G25300.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: F-box domain, 
cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana 
protein match is: F-box family protein with a domain 
of unknown function (DUF295) (TAIR:AT5G25290.1); Has 285 Blast 
hits to 224 proteins in 5 species: Archae - 0; Bacteria - 
0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other 
Eukaryotes - 3 (source: NCBI BLink). | chr5:8780258-8783093 
FORWARD LENGTH=1434
Length=1434

 Score =  106 bits (57),  Expect = 2e-22
 Identities = 99/119 (83%), Gaps = 4/119 (3%)
 Strand=Plus/Plus

Query  50   AGGGTTTCGATTTCTT-GCAAACTCGGGTAATTGGTTCCTT-GTGATAGATTCTTGTTCC  107
            |||| ||||| ||||| |||||||| | ||| ||||| ||| ||| |||||||| |||||
Sbjct  135  AGGGATTCGA-TTCTTGGCAAACTCAGTTAACTGGTT-CTTGGTGCTAGATTCTCGTTCC  192

Query  108  AATCTCTATATCATAGATGTGTTCGGCAAGAATTTGATCGATCTACTGCCTCTAGAATC  166
            |||||||||||||||||||||||  || ||||   ||||||||| |  || ||||||||
Sbjct  193  AATCTCTATATCATAGATGTGTTTAGCGAGAAAAAGATCGATCTTCCACCCCTAGAATC  251



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25770117411


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5