BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931164
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like super... 320 1e-86
AT4G33580.2 | Symbols: ATBCA5, BCA5 | beta carbonic anhydrase 5... 287 1e-76
> AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like superfamily
protein | chr2:7808871-7810795 REVERSE LENGTH=1232
Length=1232
Score = 320 bits (173), Expect = 1e-86
Identities = 277/323 (86%), Gaps = 23/323 (7%)
Strand=Plus/Plus
Query 356 TACTGAATGTGGTGCTGTTAATGCTTCTAATGGCCCCATTAATA--CA---C-AT-G-TC 407
|||||||||||||| ||||||||||||||||||| ||| | || || | || | ||
Sbjct 646 TACTGAATGTGGTGTTGTTAATGCTTCTAATGGCTACATGAGTAGCCATGTCTATGGATC 705
Query 408 TAT-------GACTGTTCTATAAATTACAACAACGTAGGTGGAGGATGGGCAAACTTGGA 460
||| ||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 706 TATGGAACAAGACTGTTCTATGAATTACAACAACGTAGGTGGAGGATGGGCAAACATGG- 764
Query 461 TTATAATCATCACTACTCATTTGCGCCTTGCAACTTCTTGC-ATAGACCAAAGCCTATGT 519
||||||| ||||||| ||| |||| ||||||||| | ||||| |||||||| |||
Sbjct 765 -----ATCATCATTACTCATCTGCACCTTACAACTTCTT-CGATAGAGCAAAGCCTCTGT 818
Query 520 TTGGTCTGGAAGGTCGTCAAGAAGAAGAAGAATGTGGTGTCAATGCTTATCTGGAACATC 579
||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 819 TTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCTTATCTGGAACATC 878
Query 580 GACGTAGGCTTCCTCTCTTCCCTATGCACGGTGAAGACCACCTCAACGGTGATAGCGGTG 639
|||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||| ||||
Sbjct 879 GACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGTAGTGGTG 938
Query 640 CTATCTGGAAGTATGGCCAATCG 662
| |||||||||||||||||||||
Sbjct 939 CCATCTGGAAGTATGGCCAATCG 961
> AT4G33580.2 | Symbols: ATBCA5, BCA5 | beta carbonic anhydrase
5 | chr4:16138360-16141624 FORWARD LENGTH=1361
Length=1361
Score = 287 bits (155), Expect = 1e-76
Identities = 205/227 (90%), Gaps = 12/227 (5%)
Strand=Plus/Plus
Query 116 GGATAACTTAGAACACTACAAAAATTTGGCAGATGCTCAAGCTCCGAAGTGTAAGCAACA 175
|||| |||| ||||||||||||||| ||||||||||||||||| | ||| |
Sbjct 488 GGATGACTTTGAACACTACAAAAATCTGGCAGATGCTCAAGCT-C----------CAA-A 535
Query 176 GTTTCTGGTGATCGCTTGTGCAGACTCTAGGGTTTGTCCTTCTACTGTCCTGGGATTCCA 235
|||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 536 GTTTCTGGTGATTGCTTGTGCAGACTCTAGAGTTTGTCCTTCTGCTGTCCTGGGATTCCA 595
Query 236 ACCGGGTGATGCATTCACTGTTCGCAACATTGCAAATTTAGTACCTTCATATGAGTCGGG 295
||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 596 ACCGGGTGACGCATTCACTGTTCGTAACATTGCAAATTTAGTACCTCCATATGAGTCTGG 655
Query 296 ACCTACTGAAACCAAAGCTGCTCTAGAGTTCTCTGTGAATACTCTTA 342
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 ACCTACTGAAACCAAAGCTGCTCTAGAGTTCTCTGTGAATACTCTTA 702
Score = 187 bits (101), Expect = 1e-46
Identities = 111/116 (96%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 1 AAGCTTCAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 AAGCTACAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 396
Query 61 ATGGGGTTGCAATTAATAGACAAAATGACAATGATGTATTTGACGACATGAAACAG 116
|||||||||||||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct 397 ATGGGGTTGCAATTGATAGACAAAACAACACTGATGTATTTGACGACATGAAACAG 452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36017883399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5