BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931165
Length=351
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14510.1 | Symbols: | Leucine-rich repeat protein kinase fa... 268 2e-71
AT2G14440.1 | Symbols: | Leucine-rich repeat protein kinase fa... 231 2e-60
AT1G07550.1 | Symbols: | Leucine-rich repeat protein kinase fa... 183 7e-46
> AT2G14510.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr2:6171133-6175052 REVERSE LENGTH=2607
Length=2607
Score = 268 bits (145), Expect = 2e-71
Identities = 180/196 (92%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 104 TGTCGAGGAGATCATTCACGTCACAAGGTCTAACATCTTGGACATATGTCTCGTAAAAAC 163
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 438 TGTCGAGGAGATCGTTCACGTCACAAGGTCTAACATCTTGGACATATGTCTCGTCAAAAC 497
Query 164 AGGGACGAGTACACCAATGATATCAGCCATAGAACTACGACCTATGCGATATGATACTTA 223
|||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 498 AGGGACAAGTACACCAATGATATCAGCCATAGAACTAAGACCTTTGCGATATGATACTTA 557
Query 224 TACTGCTCGAACCGGATCCTTAAAGATTATTGAGCGCAC--CTACTTCGCCAATTCAGAC 281
||||||||||||||| |||||||||| ||| | |||||| ||||||| |||||||||||
Sbjct 558 TACTGCTCGAACCGGTTCCTTAAAGAGTAT-G-GCGCACTTCTACTTCACCAATTCAGAC 615
Query 282 AAG-CTAATACGGTAT 296
|| | |||||| |||
Sbjct 616 GAGGC-AATACGTTAT 630
Score = 119 bits (64), Expect = 2e-26
Identities = 76/82 (93%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 21 ATGGAGAATCTTAACAAGCTTCTGCTACTCGCTTGTGCCACTTTCTCCGTTATGTCTCTT 80
||||||| || ||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGAGACTCGTAACAAGTTTATGCTACTCGCTTGTGCCACTTTCTCCATTATGTCTCTT 60
Query 81 GTTAAGTCTCAAAATCAAGAAG 102
|||||||||||||||||| |||
Sbjct 61 GTTAAGTCTCAAAATCAACAAG 82
> AT2G14440.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr2:6143073-6147419 FORWARD LENGTH=2661
Length=2661
Score = 231 bits (125), Expect = 2e-60
Identities = 161/179 (90%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 106 TCGAGGAGATCATTCACGTCACAAGGTCTAACATCTTGGACATATGTCTCGTAAAAACAG 165
||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||
Sbjct 443 TCGAGGAGATCATTCACGTCACAAGGTGTAATATCTTGGACATATGTCTCGTCAAAACAG 502
Query 166 GGACGAGTACACCAATGATATCAGCCATAGAACTACGACCTATGCGATATGATACTTATA 225
|||||| ||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 503 GGACGACTACACCAATGATATCAGCCATAGAATTAAGACCTTTGCGATATGATACTTATA 562
Query 226 CTGCTCGAACCGGATCCTTAAAGATTATTGAGCGCACCTACTTCGCCAATTCAGACAAG 284
|||||||||| || |||||||||| ||| || | ||||||| ||||||||| ||||
Sbjct 563 CTGCTCGAACAGGTTCCTTAAAGAAAATTTTGCACTTCTACTTCACCAATTCAGGCAAG 621
> AT1G07550.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:2322653-2326561 REVERSE LENGTH=2700
Length=2700
Score = 183 bits (99), Expect = 7e-46
Identities = 163/193 (84%), Gaps = 8/193 (4%)
Strand=Plus/Plus
Query 108 GAGGAGATCATTCACGTCACAAGGTCTAACATCTTGGACATATGTCTCGTAAAAACAGGG 167
||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 485 GAGGAGATCATTCACATCACAAGGTCTAACATCTTGGACATATGTCTCGTCAAGACAGGG 544
Query 168 ACGAGTACACCAATGATATCAGCCATAGAACT-ACGACC-TATGCGATATGATACTTATA 225
||||||||||||||||||||| ||||||| | | |||| | ||| ||||||||||||||
Sbjct 545 ACGAGTACACCAATGATATCATCCATAGAGTTGA-GACCCT-TGCTATATGATACTTATA 602
Query 226 CTGCTCGAACCGGATCCTTAAAGA-TTATTGAGCGCACCTACTTCGCCAATTCAGACAAG 284
||||| |||||| ||||| | || |||| | || ||| ||| || ||||| ||||
Sbjct 603 TTGCTCAAACCGGTTCCTTGAGGAATTATA-ACCGGTTCTATTTCACCGATTCAAACAA- 660
Query 285 CTA-ATACGGTAT 296
||| ||||| |||
Sbjct 661 CTATATACGTTAT 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16437553923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5