BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931168

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G28160.1 | Symbols:  | Galactose oxidase/kelch repeat superf...  75.0    3e-13
  AT4G39756.1 | Symbols:  | Galactose oxidase/kelch repeat superf...  63.9    6e-10
  AT5G28180.1 | Symbols:  | Galactose oxidase/kelch repeat superf...  54.7    4e-07


> AT5G28160.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr5:10137926-10139013 FORWARD LENGTH=975
Length=975

 Score = 75.0 bits (40),  Expect = 3e-13
 Identities = 65/76 (86%), Gaps = 5/76 (7%)
 Strand=Plus/Plus

Query  70   ATTTGGTGTGCGGTGATTGCGCTTGAAAGACA-CA-G-TAGTGAAGA-GATTTGGGGAAA  125
            |||||||||||||||||||||||||||| ||  || | |||||| || | ||||||||||
Sbjct  841  ATTTGGTGTGCGGTGATTGCGCTTGAAAAACGTCATGGTAGTGATGAAG-TTTGGGGAAA  899

Query  126  GATTGAGTGGGTTGAT  141
             ||||| |||| ||||
Sbjct  900  CATTGAATGGGCTGAT  915


> AT4G39756.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr4:18441756-18443000 FORWARD LENGTH=1195
Length=1195

 Score = 63.9 bits (34),  Expect = 6e-10
 Identities = 57/68 (84%), Gaps = 2/68 (3%)
 Strand=Plus/Plus

Query  70    ATTTGGTGTGCGGTGATTGCGCTTGAAA-GACACAGTAGTGAAGAGATTTGGGGAAAGAT  128
             |||||||||||||||||||||||||||| | |  |  | ||| || |||||||||||| |
Sbjct  994   ATTTGGTGTGCGGTGATTGCGCTTGAAAAG-CGTAAAATTGATGAAATTTGGGGAAAGGT  1052

Query  129   TGAGTGGG  136
             | ||||||
Sbjct  1053  TAAGTGGG  1060


> AT5G28180.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr5:10162783-10163943 FORWARD LENGTH=1059
Length=1059

 Score = 54.7 bits (29),  Expect = 4e-07
 Identities = 60/73 (82%), Gaps = 9/73 (12%)
 Strand=Plus/Plus

Query  70   ATTTGGTGTGCGGTGATTGCGCTTGAAAGACAC-A-G-TAGT-GAAGA-GATTTGGGG-A  123
            |||||||||||||||||||||||||||| ||   | | | || || || | ||||||| |
Sbjct  925  ATTTGGTGTGCGGTGATTGCGCTTGAAAAACGTGATGGT-GTTGATGAAG-TTTGGGGGA  982

Query  124  AAGATTGAGTGGG  136
            || ||||||||||
Sbjct  983  AA-ATTGAGTGGG  994



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10103817549


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5