BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931178
Length=322
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14610.1 | Symbols: PR1, PR 1, ATPR1 | pathogenesis-related ... 394 3e-109
> AT2G14610.1 | Symbols: PR1, PR 1, ATPR1 | pathogenesis-related
gene 1 | chr2:6241704-6242463 REVERSE LENGTH=760
Length=760
Score = 394 bits (213), Expect = 3e-109
Identities = 245/261 (94%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 2 CCATTATCGACTTAGAAAAATGAATTTCATTAGCTATTCTCGATTTCTAATAGTTTTTGT 61
|||||||| |||||||||||||||||| | | |||||||||||||| |||| || |||||
Sbjct 16 CCATTATCAACTTAGAAAAATGAATTTTACTGGCTATTCTCGATTTTTAATCGTCTTTGT 75
Query 62 AGCCCTTGTAGGAGCTCTTGTTCTTCCCACGAAGGCTCAAGACAGCCCACAAGACTATCT 121
||| |||||||| ||||||||||||||| |||| |||||||| ||||||||||| |||||
Sbjct 76 AGCTCTTGTAGGTGCTCTTGTTCTTCCCTCGAAAGCTCAAGATAGCCCACAAGATTATCT 135
Query 122 AAGGGTTCACAACCAGGCACGAGGAGCGGTAGGCGTAGGTCCCATGCAGTGGGACGAGAG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 AAGGGTTCACAACCAGGCACGAGGAGCGGTAGGCGTAGGTCCCATGCAGTGGGACGAGAG 195
Query 182 GGTTGCAGCCTACGCTCGGAGCTACGCAGAACAACTAAGAGGCAACTGCAGACTCGTACA 241
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 196 GGTTGCAGCCTATGCTCGGAGCTACGCAGAACAACTAAGAGGCAACTGCAGACTCATACA 255
Query 242 CTCGGGTGGGCCTTACGGGGA 262
||| |||||||||||||||||
Sbjct 256 CTCTGGTGGGCCTTACGGGGA 276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14979789202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5