BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931184
Length=549
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25450.1 | Symbols: ATNAP8, NAP8 | non-intrinsic ABC protein... 233 1e-60
AT4G25440.1 | Symbols: ZFWD1 | zinc finger WD40 repeat protein ... 169 3e-41
AT2G35390.2 | Symbols: | Phosphoribosyltransferase family prot... 82.4 4e-15
> AT4G25450.1 | Symbols: ATNAP8, NAP8 | non-intrinsic ABC protein
8 | chr4:13009733-13013971 REVERSE LENGTH=2316
Length=2316
Score = 233 bits (126), Expect = 1e-60
Identities = 178/202 (88%), Gaps = 8/202 (4%)
Strand=Plus/Plus
Query 79 TTTTTGGAACAATCTGCATTCTTTTTACTCTATC-CCGTCAACTTGCACCTGTGCTTGGT 137
||||||||||||| || || || ||||||||||| || ||||||||||||||| ||||||
Sbjct 766 TTTTTGGAACAATATGTATCCTATTTACTCTATCTCC-TCAACTTGCACCTGTACTTGGT 824
Query 138 CTATTGATGCTAGCTGTGTCAGTGT-TAGTTGGTTAACTCTATATG-GATCAACAGTTCC 195
||||||||||||||||||||||| | ||||| | | | || | | |||| || |||||
Sbjct 825 CTATTGATGCTAGCTGTGTCAGT-TCTAGTT-GCT--GTGTACAAGAGATCGACTGTTCC 880
Query 196 TGTTTATAAAGCACATGGATTAGCTCAAGCAACAATGTCAGATTGTGTATCAGAAACGTT 255
|||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 881 TGTTTATAAATCGCATGGATTAGCTCAAGCAACAATGTCTGATTGTGTATCAGAAACGTT 940
Query 256 CTCTGCAATCCGAACTGGAAGA 277
||||||||||||||||| ||||
Sbjct 941 CTCTGCAATCCGAACTGTAAGA 962
> AT4G25440.1 | Symbols: ZFWD1 | zinc finger WD40 repeat protein
1 | chr4:13006727-13009608 REVERSE LENGTH=1799
Length=1799
Score = 169 bits (91), Expect = 3e-41
Identities = 195/240 (81%), Gaps = 27/240 (11%)
Strand=Plus/Plus
Query 308 GTGCTATCTCTCTGTGGCGTCCATGATGCAGAAGCCAAGCTAGTATTTCTATGTGCGTCC 367
|||||| ||||||||||||||||||||||||||||||||| |||||| |||||| ||| |
Sbjct 1180 GTGCTAGCTCTCTGTGGCGTCCATGATGCAGAAGCCAAGCCAGTATTGCTATGTTCGTGC 1239
Query 368 AATGACAATTCATTGCACCTTTATGATTTGCCATCCTTAGATTCTGTTTTTTCTGTTCGG 427
||||||||||| ||||||| | | | || || || | | | || |
Sbjct 1240 AATGACAATTCGTTGCACC--TCT-A--TG--AT--TT-G---C--------C--ATC-G 1275
Query 428 TTTACAGAAAAGGGCAAAGTTTTAGC-AGAGCAAGAGATCCGATTGATCCAGATTGGTCC 486
||||| |||| ||||||| ||||||| | |||||||||| || | |||||||| |||||
Sbjct 1276 TTTACGGAAAGGGGCAAAATTTTAGCTA-AGCAAGAGATTCGGTCAATCCAGATAGGTCC 1334
Query 487 CGGGGGCATATTTTTCACCGGTGATGGAAGTGGTCTCGGTTAAAGTATGGAAGTGGTCTA 546
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1335 CGGGGGCATATTTTTCACCGGTGATGGAAGTGGTCAAG-TTAAAGTATGGAAGTGGTCTA 1393
> AT2G35390.2 | Symbols: | Phosphoribosyltransferase family protein
| chr2:14895279-14897822 REVERSE LENGTH=1702
Length=1702
Score = 82.4 bits (44), Expect = 4e-15
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 34 AGAATCTCATGGAGCTTTTGATTATGGTAGATGCTTGCCGAAGA 77
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 AGAATCTCATGGAGCTTTTGATTATGGTAGATGCTTGCCGAAGA 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26322693028
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5