BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931187
Length=446
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11770.1 | Symbols: | Galactose oxidase/kelch repeat superf... 91.6 6e-18
AT4G11750.1 | Symbols: | Galactose oxidase/kelch repeat superf... 80.5 1e-14
> AT4G11770.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:7082279-7083469 REVERSE LENGTH=1191
Length=1191
Score = 91.6 bits (49), Expect = 6e-18
Identities = 70/80 (88%), Gaps = 2/80 (3%)
Strand=Plus/Plus
Query 58 CTTCCTAATGATTTGGTATTAAAC-TGCTTAGCCCACGTTTCGAGATTGTACTACCCGAT 116
|||||| ||||||| |||||||| | ||||| || || ||||||||||||||||||||
Sbjct 43 CTTCCTGATGATTTACTATTAAACAT-CTTAGGCCGTGTCTCGAGATTGTACTACCCGAT 101
Query 117 TCTCTCCTTAGTTTCCCAGA 136
|||||||||||||||| |||
Sbjct 102 TCTCTCCTTAGTTTCCAAGA 121
> AT4G11750.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:7077390-7078550 REVERSE LENGTH=1161
Length=1161
Score = 80.5 bits (43), Expect = 1e-14
Identities = 54/59 (92%), Gaps = 2/59 (3%)
Strand=Plus/Plus
Query 79 AACTGCTTAGCCC-ACGTTTCGAGATTGTACTACCCGATTCTCTCCTTAGTTTCCCAGA 136
||||||||||||| | || ||||||||||||||||||||||||||||| |||||| |||
Sbjct 52 AACTGCTTAGCCCGA-GTCTCGAGATTGTACTACCCGATTCTCTCCTTGGTTTCCAAGA 109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21212990078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5