BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931192

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36540.1 | Symbols:  | Haloacid dehalogenase-like hydrolase ...   122    2e-27


> AT2G36540.1 | Symbols:  | Haloacid dehalogenase-like hydrolase 
(HAD) superfamily protein | chr2:15325237-15326449 FORWARD 
LENGTH=750
Length=750

 Score =  122 bits (66),  Expect = 2e-27
 Identities = 82/90 (91%), Gaps = 0/90 (0%)
 Strand=Plus/Plus

Query  360  CAAGCCTTTGTTCTTTAAGAATCTCTCTAAAGTGTTTTAGTGCTTCAAAGGGTACTTTGC  419
            ||||||||||||||||||| ||||||||||||||||  ||||||| ||||| | || |||
Sbjct  423  CAAGCCTTTGTTCTTTAAGGATCTCTCTAAAGTGTTCAAGTGCTTTAAAGGCTTCTCTGC  482

Query  420  TTCAAACACCATCTTCATTGATGATGGACC  449
            |||||||||||||||||||||||||| |||
Sbjct  483  TTCAAACACCATCTTCATTGATGATGAACC  512



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22856536885


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5