BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931200
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11653.1 | Symbols: RALFL29 | RALF-like 29 | chr4:7037086-70... 318 2e-86
> AT4G11653.1 | Symbols: RALFL29 | RALF-like 29 | chr4:7037086-7037358
REVERSE LENGTH=273
Length=273
Score = 318 bits (172), Expect = 2e-86
Identities = 243/277 (88%), Gaps = 5/277 (2%)
Strand=Plus/Plus
Query 22 ATGATAAAAACAAAAGAGGTTACGTTTGTGACAATTTTGATTTTATTATGCGTGTTTATA 81
||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1 ATGATAAAAACAAAAGAAGTTACGTTTGTGACGATTTTGATTGTATTATGCGTGTTTATA 60
Query 82 TGTTGCATTGATGCGCaaaaaaaaTATATTCACTATCCAATTAGAAGAGATTTAGGTAAT 141
|| |||| ||||| |||| ||||||| | |||||||||||| ||||||||||||
Sbjct 61 AGTACCATTCATGCG---AAAAGATATATTGAGTATCCAATTAGATTAGATTTAGGTAAA 117
Query 142 GGTTGTGATCCAAGATTTCCTACCGCTGCATGTTATAAGCGCATACCAGCGAATCCGTAT 201
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct 118 GGTTGTGATCCAAGATTTCCTACCGCTGCATGTTATAAGCGCACACCAGCAAATCCATAT 177
Query 202 ACGCGAGGATGTAGTATTGCCAATAGATGCCGCCGTTCTACTTTTTCTGTACGAGTATCA 261
| ||| ||||| || |||||||||||| || |||||||||| |||| ||||||| ||
Sbjct 178 AGGCGTCCATGTACTACTGCCAATAGATGTCGTCGTTCTACTTCTTCTACACGAGTACCA 237
Query 262 TCTTTGAAAAAGTTTT-TGGAAATACCACCAATGTAA 297
|||||||||| |||| ||||||||||||||||||||
Sbjct 238 TCTTTGAAAAC-TTTTGTGGAAATACCACCAATGTAA 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14828985955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5