BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931204
Length=1927
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14740.1 | Symbols: ATVSR3, VSR3, VSR2;2, BP80-2;2 | vaculol... 3042 0.0
AT2G14720.1 | Symbols: VSR4, VSR2;1, BP80-2;1, MTV4 | vacuolar ... 2929 0.0
AT4G06498.1 | Symbols: | pseudogene, vacuolar sorting receptor... 433 4e-120
AT4G20110.2 | Symbols: VSR7 | VACUOLAR SORTING RECEPTOR 7 | chr... 230 5e-59
> AT2G14740.1 | Symbols: ATVSR3, VSR3, VSR2;2, BP80-2;2 | vaculolar
sorting receptor 3 | chr2:6308895-6312589 FORWARD LENGTH=2173
Length=2173
Score = 3042 bits (1647), Expect = 0.0
Identities = 1824/1911 (95%), Gaps = 5/1911 (0%)
Strand=Plus/Plus
Query 21 ATGAAGCAGCTTCAGTATTATCTTCCATGGCTGC-T-T-CTCACTCTTCTGTTTTCCTCC 77
||||||||||||| || ||| ||||||||||||| | | |||||||||||| ||||| ||
Sbjct 1 ATGAAGCAGCTTCTGTGTTACCTTCCATGGCTGCTTCTCCTCACTCTTCTGGTTTCC-CC 59
Query 78 TTT-AGCGAAGCTCGATTCGTGGTGGAGAAGAATAGTTTGTCGGTGACATCGCCGGAGAG 136
||| | ||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 60 TTTAAACGACGCTCGATTCGTGGTGGAGAAGAACAGTTTGTCCGTGACGTCGCCGGAGAG 119
Query 137 TATAAAAGGAACACATGATAGTGCAATTGGTAACTTTGGGATTCCTCAGTACGGCGGAAG 196
|||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 120 TATAAAAGGAACTCATGATAGTGCAATTGGTAACTTCGGGATTCCTCAATACGGTGGAAG 179
Query 197 TATGGCTGGTACAGTGGTTTATCCCAAAGAGAATCAGAAATCGTGTAAGGAGTTTAGCGA 256
|||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 180 TATGGCTGGTACGGTGGTTTATCCGAAAGAGAATCAGAAATCGTGTAAGGAATTTAGCGA 239
Query 257 TTTCTCGATTTCGTTCAAGTCACAACCTGGTGCTTTACCTACTTTCCTCTTGGTTGATCG 316
||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 240 TTTCTCGATTTCGTTCAAGTCTCAGCCTGGTGCTTTACCTACTTTCCTCTTAGTTGATCG 299
Query 317 TGGAGATTGTTTCTTCGCTTTGAAGGTTTGGAATGCACAGAAAGCGGGTGCGTCTGCTGT 376
||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct 300 TGGAGATTGTTTCTTCGCTTTGAAGGTATGGAACGCACAGAAAGCAGGTGCTTCTGCTGT 359
Query 377 TCTTGTGGCTGATAATGTTGATGAACCTTTGATTACAATGGATACACCTGAAGAGGATGT 436
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 TCTTGTAGCTGATAATGTTGATGAACCTTTGATTACAATGGATACACCTGAAGAAGATGT 419
Query 437 TTCTTCTGCTAAGTATATTGAGAATATTACTATACCTTCTGCTCTTGTTACTAAAGGTTT 496
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTCTTCTGCAAAGTATATTGAGAATATTACTATACCTTCTGCTCTTGTTACTAAAGGTTT 479
Query 497 TAGTGAGAAGCTGAAGAAAGCGATTAGTGGAGGGGATATGGTTAACTTGAATCTTGACTG 556
| |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 480 TGGTGAAAAGCTGAAGAAAGCTATTAGTGGAGGAGATATGGTTAACTTGAATCTTGACTG 539
Query 557 GAGAGAGGCTGTTCCGCATCCTGATGACCGTGTTGAGTATGAGTTGTGGACTAATAGCAA 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 GAGAGAGGCTGTTCCGCATCCTGATGACCGTGTTGAGTATGAGTTGTGGACTAATAGTAA 599
Query 617 TGATGAGTGTGGGGTTAAGTGTGACATGTTGATGGAGTTTGTGAAAGATTTTAAGGGTGC 676
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 600 TGATGAATGTGGGGTTAAGTGTGATATGTTGATGGAGTTTGTGAAAGATTTTAAGGGAGC 659
Query 677 TGCTCAGATTCTTGAGAAAGGCGGTTTTACGCAGTTTAGACCTCATTATATTACTTGGTA 736
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 GGCGCAGATTCTTGAGAAAGGCGGGTTTACGCAGTTTAGACCTCATTATATTACTTGGTA 719
Query 737 TTGTCCTCATGCTTTCACGTTGAGCCGACAGTGTAAGTCTCAGTGTATCAATAAGGGAAG 796
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 720 TTGTCCTCATGCTTTCACGTTGAGTCGACAGTGTAAGTCTCAGTGTATCAATAAAGGAAG 779
Query 797 GTACTGCGCTCCTGATCCAGAACAGGACTTTAGCTCGGGATATGATGGAAAAGACGTTGT 856
|||||| |||||||||||||| |||||||||||||||||||| ||||||||||| || ||
Sbjct 780 GTACTGTGCTCCTGATCCAGAGCAGGACTTTAGCTCGGGATACGATGGAAAAGATGTGGT 839
Query 857 TGTGGAAAATTTGAGACAGCTTTGTGTTTACAAGGTGGCGAATGAAACCGGGAAACCCTG 916
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 840 CGTGGAAAACTTGAGACAGCTTTGTGTTTACAAGGTGGCGAATGAAACCGGCAAACCTTG 899
Query 917 GGTCTGGTGGGATTATGTCACTGATTTCCAGATCAGATGTCCCATGAAGGAGAAGAAATA 976
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGTCTGGTGGGATTATGTTACTGATTTCCAGATCAGATGTCCCATGAAGGAGAAGAAATA 959
Query 977 CAACAAGGAGTGTGCTGATTCCGTTATCAAATCTCTTGGAATTGATAGTAAAAAACTTGA 1036
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CAATAAGGAGTGTGCTGATTCCGTTATCAAATCTCTTGGAATTGATAGTAAAAAACTTGA 1019
Query 1037 CAAGTGTATGGGAGACCCCGATGCTGACTTGGACAATCCAGTTCTTAAGGAAGAACAAGA 1096
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CAAGTGTATGGGAGACCCTGATGCTGACTTGGACAATCCAGTTCTTAAGGAAGAACAAGA 1079
Query 1097 TGCTCAAGTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAA 1156
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1080 TGCTCAAGTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTCAA 1139
Query 1157 CAACAGACAGTACCGAGGCAAGTTGGAGAGGAGTGCAGTACTGAAGGCTCTATGCTCTGG 1216
|||||||||||||||||| |||||||||| |||||||||||| |||||| ||||||||||
Sbjct 1140 CAACAGACAGTACCGAGGAAAGTTGGAGAAGAGTGCAGTACTCAAGGCTTTATGCTCTGG 1199
Query 1217 TTTTGAGGAGACCACTGAACCAGCTATATGCCTCAGCACAGATGTGGAGTCAAACGAGTG 1276
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1200 TTTTGAGGAGACCACTGAACCAGCGATATGCCTCAGCACAGATGTGGAGTCAAACGAGTG 1259
Query 1277 CTTAGATAACAATGGCGGTTGTTGGCAAGATAAATCAGCCAACATAACTGCTTGCAAGGA 1336
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CTTAGATAACAATGGTGGTTGTTGGCAAGATAAATCAGCCAACATAACTGCTTGCAAGGA 1319
Query 1337 TACATTTCGTGGAAGAGTATGCGAGTGTCCTACAGTTGATGGTGTGCAATTCACAGGGGA 1396
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1320 TACTTTTCGTGGAAGAGTATGCGAGTGTCCTACAGTTGATGGTGTGCAATTCAAAGGGGA 1379
Query 1397 TGGTTACAGCCACTGTGAACCAAGCGGGCCAGGGAGATGCACAATCAACAATGGAGGTTG 1456
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TGGTTACAGTCACTGTGAACCAAGCGGGCCAGGGAGATGCACAATCAACAATGGAGGTTG 1439
Query 1457 TTGGCATGAAGAGAGAGATGGACATGCGTTCTCTGCTTGTGTGGACAAGGACAGTGTTAA 1516
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TTGGCATGAAGAGCGAGATGGACATGCGTTCTCTGCTTGTGTGGACAAGGACAGTGTTAA 1499
Query 1517 GTGCCAGTGTCCTCCAGGATTTAAAGGAGACGGTATTAAGAAGTGTGAAGATATTAATGA 1576
|||| ||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 1500 GTGCGAGTGTCCTCCAGGATTTAAAGGAGATGGTACTAAGAAGTGTGAAGACATTAATGA 1559
Query 1577 GTGCAAAGAGAAGAAAGCATGTCAGTGCCCGGAATGTAGCTGCAAGAACACCTGGGGAAG 1636
||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||
Sbjct 1560 GTGCAAAGAGAAGAAAGCATGCCAGTGCCCAGAGTGTAGCTGCAAGAACACATGGGGAAG 1619
Query 1637 CTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATCAGAGATCATGACACTTGCATCAG 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 CTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATCAGAGATCATGACACTTGCATCAG 1679
Query 1697 CAAGACAGGTGCACAAGTGAGATCAGCATGGGCGGCCGTTTGGCTTATAATGTTATCATT 1756
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 CAAGACGGGTGCACAAGTGAGATCAGCATGGGCGGCCGTTTGGCTTATAATGTTATCATT 1739
Query 1757 GGGACTTGCAGCTGGTGGGGCGTACCTCGTTTACAAATATAGATTGAGGCAATACATGGA 1816
|||||||||||||| ||| || |||||||||||||||||||| | ||||||||||||||
Sbjct 1740 GGGACTTGCAGCTGCTGGTGCATACCTCGTTTACAAATATAGGCTAAGGCAATACATGGA 1799
Query 1817 CTCGGAGATCAGAGCCATAATGGCACAGTACATGCCACTGGACAGCCAACCGGAGGTCCC 1876
||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||
Sbjct 1800 CTCAGAGATCAGAGCCATAATGGCACAGTACATGCCATTGGACAGCCAACCCGAGATCCC 1859
Query 1877 GAACCACGTGAATGATGAACGCGCCTGAGAAAGCAAAATAGTCCATCTATT 1927
|||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1860 GAACCACGTGAATGATGAACGCGCCTGAGAAAGCAAAACAGTCCATCTATT 1910
> AT2G14720.1 | Symbols: VSR4, VSR2;1, BP80-2;1, MTV4 | vacuolar
sorting receptor 4 | chr2:6300488-6304359 REVERSE LENGTH=2480
Length=2480
Score = 2929 bits (1586), Expect = 0.0
Identities = 1821/1935 (94%), Gaps = 13/1935 (1%)
Strand=Plus/Plus
Query 1 TTGAGACGGAGATCTCGAAGATGAAGCAGCTTC-AGTATTATCTTCCATGG---CTGCTT 56
||||| ||||||||||||||||||||||||||| | | ||||||||||||| || |||
Sbjct 184 TTGAGGCGGAGATCTCGAAGATGAAGCAGCTTCTA-TGTTATCTTCCATGGCTTCTTCTT 242
Query 57 CTCACTCTTCTGTTTTCCTCC-TTTAGCGAAGCTCGATTCGTGGTGGAGAAGAATAGTTT 115
||| ||||| || ||||| || |||| ||| ||||||||||| |||||||||||||||||
Sbjct 243 CTCTCTCTTGTGGTTTCC-CCTTTTAACGAGGCTCGATTCGTTGTGGAGAAGAATAGTTT 301
Query 116 GTCGGTGACATCGCCGGAGAGTATAAAAGGAACACATGATAGTGCAATTGGTAACTTTGG 175
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 302 GTCGGTGACTTCGCCGGAGAGTATAAAAGGAACTCATGATAGTGCAATTGGTAACTTCGG 361
Query 176 GATTCCTCAGTACGGCGGAAGTATGGCTGGTACAGTGGTTTATCCCAAAGAGAATCAGAA 235
||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 362 GATTCCTCAGTACGGTGGAAGTATGGCTGGTACGGTGGTTTATCCTAAAGAGAATCAGAA 421
Query 236 ATCGTGTAAGGAGTTTAGCGATTTCTCGATTTCGTTCAAGTCACAACCTGGTGCTTTACC 295
|||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 422 ATCGTGTAAGGAATTTAGCGATTTCTCGATTTCGTTCAAGTCTCAGCCTGGTGCTTTACC 481
Query 296 TACTTTCCTCTTGGTTGATCGTGGAGATTGTTTCTTCGCTTTGAAGGTTTGGAATGCACA 355
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 482 TACTTTCCTCTTAGTTGATCGTGGAGATTGTTTCTTCGCTTTGAAGGTATGGAACGCACA 541
Query 356 GAAAGCGGGTGCGTCTGCTGTTCTTGTGGCTGATAATGTTGATGAACCTTTGATTACAAT 415
|||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 542 GAAAGCAGGTGCTTCTGCTGTTCTTGTAGCTGATAATGTTGATGAGCCTTTGATTACAAT 601
Query 416 GGATACACCTGAAGAGGATGTTTCTTCTGCTAAGTATATTGAGAATATTACTATACCTTC 475
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 602 GGATACACCTGAAGAAGATGTTTCTTCTGCAAAGTATATCGAGAATATTACTATACCTTC 661
Query 476 TGCTCTTGTTACTAAAGGTTTTAGTGAGAAGCTGAAGAAAGCGATTAGTGGAGGGGATAT 535
|||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |||||
Sbjct 662 TGCTCTTGTTACTAAAGGTTTTGGTGAAAAGCTGAAGAAAGCTATTAGTGGAGGTGATAT 721
Query 536 GGTTAACTTGAATCTTGACTGGAGAGAGGCTGTTCCGCATCCTGATGACCGTGTTGAGTA 595
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 722 GGTTAACTTGAATCTTGACTGGAGAGAGGCTGTTCCACATCCTGATGACCGTGTTGAGTA 781
Query 596 TGAGTTGTGGACTAATAGCAATGATGAGTGTGGGGTTAAGTGTGACATGTTGATGGAGTT 655
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 782 TGAGTTGTGGACTAATAGTAATGATGAATGTGGGGTTAAGTGTGATATGTTGATGGAGTT 841
Query 656 TGTGAAAGATTTTAAGGGTGCTGCTCAGATTCTTGAGAAAGGCGGTTTTACGCAGTTTAG 715
|||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 842 TGTGAAGGATTTTAAGGGAGCGGCGCAGATTCTTGAGAAAGGCGGTTTTACGCAGTTTAG 901
Query 716 ACCTCATTATATTACTTGGTATTGTCCTCATGCTTTCACGTTGAGCCGACAGTGTAAGTC 775
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 902 GCCTCATTATATTACTTGGTATTGTCCTCATGCTTTCACGTTGAGTCGACAGTGTAAGTC 961
Query 776 TCAGTGTATCAATAAGGGAAGGTACTGCGCTCCTGATCCAGAACAGGACTTTAGCTCGGG 835
||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 962 TCAGTGTATCAATAAAGGAAGGTACTGTGCTCCTGATCCAGAGCAGGACTTTAGCTCGGG 1021
Query 836 ATATGATGGAAAAGACGTTGTTGTGGAAAATTTGAGACAGCTTTGTGTTTACAAGGTGGC 895
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 ATACGATGGAAAAGACGTGGTTGTGGAAAATTTGAGACAGCTTTGTGTTTACAAGGTGGC 1081
Query 896 GAATGAAACCGGGAAACCCTGGGTCTGGTGGGATTATGTCACTGATTTCCAGATCAGATG 955
|||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1082 GAATGAAACCGGCAAACCTTGGGTCTGGTGGGATTATGTTACTGATTTCCAGATCAGATG 1141
Query 956 TCCCATGAAGGAGAAGAAATACAACAAGGAGTGTGCTGATTCCGTTATCAAATCTCTTGG 1015
||| ||||||||||| ||||||||||| || |||||||| || || ||||||||||||||
Sbjct 1142 TCCAATGAAGGAGAAAAAATACAACAAAGATTGTGCTGAGTCTGTAATCAAATCTCTTGG 1201
Query 1016 AATTGATAGTA-AAAAACTTGACAAGTGTATGGGAGACCCCGATGCTGACTTGGACAATC 1074
||| ||||| | ||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1202 AATCGATAGCAGAAAAA-TTGACAAGTGTATGGGAGACCCTGATGCTGACTTGGACAATC 1260
Query 1075 CAGTTCTT-AAGGAAGAACAAGATGCTCAAGTTGGCAAGGGTTCAAGGGGTGATGTTACC 1133
||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1261 CAGTT-TTAAAGGAAGAACAAGATGCTCAAGTTGGCAAGGGTACAAGGGGTGATGTTACC 1319
Query 1134 ATATTGCCTACCTTAGTTGTCAACAACAGACAGTACCGAGGCAAGTTGGAGAGGAGTGCA 1193
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1320 ATATTGCCTACCTTAGTTGTCAACAACAGACAGTACCGAGGCAAGTTGGAGAAGAGTGCA 1379
Query 1194 GTACTGAAGGCTCTATGCTCTGGTTTTGAGGAGACCACTGAACCAGCTATATGCCTCAGC 1253
||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1380 GTACTCAAGGCTCTATGCTCTGGTTTTGAGGAGTCAACTGAACCAGCTATATGCCTCAGC 1439
Query 1254 ACAGATGTGGAGTCAAACGAGTGCTTAGATAACAATGGCGGTTGTTGGCAAGATAAATCA 1313
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 ACAGATATGGAGACAAACGAGTGCTTAGATAACAATGGCGGTTGTTGGCAAGATAAATCA 1499
Query 1314 GCCAACATAACTGCTTGCAAGGATACATTTCGTGGAAGAGTATGCGAGTGTCCTACAGTT 1373
|||||||||||||||||||||||||| |||||||||| |||||||| |||||||| ||||
Sbjct 1500 GCCAACATAACTGCTTGCAAGGATACGTTTCGTGGAAAAGTATGCGTGTGTCCTATAGTT 1559
Query 1374 GATGGTGTGCAATTCACAGGGGATGGTTACAGCCACTGTGAACCAAGCGGGCCAGGGAGA 1433
|||||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1560 GATGGTGTGCGATTCAAAGGAGATGGTTACAGCCACTGTGAGCCAAGCGGGCCAGGGAGA 1619
Query 1434 TGCACAATCAACAATGGAGGTTGTTGGCATGAAGAGAGAGATGGACATGCGTTCTCTGCT 1493
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TGTACAATCAACAATGGAGGTTGTTGGCATGAAGAGAGAGATGGACATGCGTTCTCTGCT 1679
Query 1494 TGTGTGGACAAGGACAGTGTTAAGTGCCAGTGTCCTCCAGGATTTAAAGGAGACGGTATT 1553
|||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| ||
Sbjct 1680 TGTGTGGACAAGGACAGTGTGAAATGCGAGTGTCCTCCAGGATTTAAAGGAGACGGTGTT 1739
Query 1554 AAGAAGTGTGAAGATATTAATGAGTGCAAAGAGAAGAAAGCATGTCAGTGCCCGGAATGT 1613
||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 AAGAAATGTGAAGACATCAATGAGTGCAAAGAGAAGAAAGCATGTCAGTGCCCGGAATGT 1799
Query 1614 AGCTGCAAGAACACCTGGGGAAGCTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATC 1673
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 AGCTGTAAGAACACCTGGGGAAGCTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATG 1859
Query 1674 AGAGATCATGACACTTGCATCAGCAAGACAGGTGCACAAGTGAGATCAGCATGGGCGGCC 1733
||||| ||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||
Sbjct 1860 AGAGACCATGACACTTGCATCAGCAAGACGGGTTCACAAGTGAAATCAGCGTGGGCGGCC 1919
Query 1734 GTTTGGCTTATAATGTTATCATTGGGACTTGCAGCTGGTGGGGCGTACCTCGTTTACAAA 1793
||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 1920 GTTTGGCTTATAATGTTATCATTGGGACTTGCAGCTGCTGGTGCATACCTCGTTTACAAA 1979
Query 1794 TATAGATTGAGGCAATACATGGACTCGGAGATCAGAGCCATAATGGCACAGTACATGCCA 1853
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1980 TATAGATTGAGGCAATACATGGACTCAGAGATCAGAGCCATAATGGCACAGTACATGCCA 2039
Query 1854 CTGGACAGCCAACCGGAGGTCCCGAACCACGTGAATGATGAACGCGCCTGAGA-AAGCAA 1912
|||||||||||||| ||||||||||||||| |||||||||||| |||| ||| || | |
Sbjct 2040 CTGGACAGCCAACCTGAGGTCCCGAACCACACGAATGATGAACGTGCCTAAGAGAA-CGA 2098
Query 1913 AATAGTCCATCTATT 1927
||| |||||||||||
Sbjct 2099 AATGGTCCATCTATT 2113
> AT4G06498.1 | Symbols: | pseudogene, vacuolar sorting receptor
-related, similar to BP-80 vacuolar sorting receptor GP:1737222
{Pisum sativum}; blastp match of 78% identity and 8.8e-70
P-value to GP|1737222|gb|AAB72110.1||U79958 BP-80 vacuolar
sorting receptor {Pisum sativum} | chr4:3145693-3147708
FORWARD LENGTH=2016
Length=2016
Score = 433 bits (234), Expect = 4e-120
Identities = 303/336 (90%), Gaps = 5/336 (1%)
Strand=Plus/Plus
Query 682 AGATTCTTGAGAAAGGCGGTTTTACGCAGTTTAGACCTCATTATATTACTTGGTATTGTC 741
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 20 AGATTCTTGAGAAAGGCGGGTTTACGCAGTTTAGACCTCATTATATTACTTGGTATTGTC 79
Query 742 CTCATGCTTTCACGTTGAGCCGACAGTGTAAGTCTCAGTGTATCAATAAGGGAAGGTACT 801
||||| || |||||||||| ||||||| ||||||||| ||||||||||| |||||||| |
Sbjct 80 CTCATACTATCACGTTGAGTCGACAGTATAAGTCTCAATGTATCAATAAAGGAAGGTATT 139
Query 802 G-CGCTCCTGATCCAGAACAGGACTTTAGCTCGGGATATGATGGAAAAGACGTTGTTGTG 860
| | ||||||||| ||| || ||||||||||||||||| |||||||||||||| ||| ||
Sbjct 140 GTC-CTCCTGATCTAGAGCACGACTTTAGCTCGGGATACGATGGAAAAGACGTGGTTATG 198
Query 861 GAAAATTTGAGACAGCTTTGTGTTTACAAGGTGGCGAATGAAACCGGGAAACCCTGGGTC 920
|||||||||||||||||||||||||||||||||||||||| ||||| | || |||||
Sbjct 199 GAAAATTTGAGACAGCTTTGTGTTTACAAGGTGGCGAATGCAACCGCCA--CCTTGGGTG 256
Query 921 TGGTGGGATTATGTCACTGATTTCCAGATCAGATGTCCCATGAAGGAGAAGAAA-TACAA 979
| |||| ||||||| ||||||||||||||||||| ||||||||||||||| ||| |||||
Sbjct 257 TAGTGGAATTATGTTACTGATTTCCAGATCAGATATCCCATGAAGGAGAAAAAAATACAA 316
Query 980 CAAGGAGTGTGCTGATTCCGTTATCAAATCTCTTGG 1015
|||||||||||||| || || ||||||||||||||
Sbjct 317 TAAGGAGTGTGCTGAGTCTGTAATCAAATCTCTTGG 352
Score = 128 bits (69), Expect = 2e-28
Identities = 80/85 (94%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 1417 CAAGCGGGCCAGGGAGATGCACAATCAAC-AATGGAGGTTGTTGGCATGAAGAGAGAGAT 1475
||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1543 CAAGCGGGCTAGGGAGATGTTCAATCAACAAATGGAGGTTGTTGGCATGAAGAGAGAGAT 1602
Query 1476 GGACATGCGTTCTCTGCTTGTGTGG 1500
||||||||||||| |||||||||||
Sbjct 1603 GGACATGCGTTCTTTGCTTGTGTGG 1627
Score = 126 bits (68), Expect = 7e-28
Identities = 70/71 (99%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 1104 GTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAACAACAGA 1163
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 GTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAACAACAGA 626
Query 1164 CAGTACCGAGG 1174
|||||||||||
Sbjct 627 CAGTACCGAGG 637
Score = 87.9 bits (47), Expect = 3e-16
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 1499 GGACAAGGACAGTGTTAAGTGCCAGTGTCCTCCAGGATTTAAAGGAGACGGTATTAAGAA 1558
||| ||||||||||| || ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1718 GGATAAGGACAGTGTCAAATGCGAGTGTCCTCCAGGATTTAAAGGAGACGGTGTTAAGAA 1777
Query 1559 GTGTGAAG 1566
| |||||
Sbjct 1778 ATTTGAAG 1785
> AT4G20110.2 | Symbols: VSR7 | VACUOLAR SORTING RECEPTOR 7 | chr4:10875233-10878729
FORWARD LENGTH=2405
Length=2405
Score = 230 bits (124), Expect = 5e-59
Identities = 693/955 (73%), Gaps = 89/955 (9%)
Strand=Plus/Plus
Query 555 TGGAGAGAGGCTGTTCCGCATCCTGATGACCGTGTTGAGTATGAGTTGTGGACTAATAGC 614
||||||||| |||| || ||||||||| | | || || |||||| ||||||||||||||
Sbjct 866 TGGAGAGAGTCTGTGCCTCATCCTGATAAGAGAGTAGAATATGAGCTGTGGACTAATAGC 925
Query 615 AATGATGAGTGTGGGGTTAAG-TGTGAC-ATGTTGATGGAGTTTGTGAAAGAT-TTTAAG 671
|||||||||||||| | | | ||||| | |||||| ||||| || || |||||
Sbjct 926 AATGATGAGTGTGGTGC-ACGGTGTGATGAACA-GATGGACTTTGTCAA-GAACTTTAAA 982
Query 672 GGTGC-TGCTCAGATTCTTGAGAAAGGCGGTTTTAC-GCAGTTTA-GACCTCATTATATT 728
||| | ||||||||| || || |||||||||| ||| || ||||| | || |||||||||
Sbjct 983 GGT-CATGCTCAGATACTCGAAAAAGGCGGTTATACCGC-GTTTACG-CCGCATTATATT 1039
Query 729 ACTTGGTATTGTCCT---CATGCTTTCACGTTGAG-CCGACAGTGTAAGTCTCAGTGTAT 784
||||||| ||| ||| || | ||| | || || ||| |||||||||||||||||
Sbjct 1040 ACTTGGTTTTGCCCTTTTCA-G-TTT-ATAAACAGTCC-ACATTGTAAGTCTCAGTGTAT 1095
Query 785 CAATAA-GGGAAGGTACTGCGCTCCTGATCCAGAACAGGACTTT-AGCTC-GGGATATGA 841
|| | |||| |||| || |||||||| || || | | ||| || ||| |||||
Sbjct 1096 AAACCATGGGA-GGTATTGTGCTCCTGACCCTGAGGATAA-TTTCAGAGAAGGG-TATGA 1152
Query 842 TGGAAAAGACGTTGTTG-TGGAAAATTTGAGACAGCTTTGTGTTTACA-AGGTGGCGAAT 899
|| ||||| ||||| | | || ||| |||||||||||||||| | | || || |||||
Sbjct 1153 AGGGAAAGATGTTGT-GCTTGAGAATCTGAGACAGCTTTGTGTGCATAGAGTTG-CGAAT 1210
Query 900 GAAACCGGGAAACCCTGGGTCTGGTGGGATTATGTCACTGATTTCCAGA-TCAGATGTCC 958
|| | | | || ||||| |||||||||||||| || ||||| || || ||||| |
Sbjct 1211 GAGAGTAGCAGGCCTTGGGTTTGGTGGGATTATGTTACCGATTTTCATTCTC-GATGTTC 1269
Query 959 CATGAAGGAGAAGAAATACAACA-AGGAGTGTGCTGA---TTCCG--T-TATCAA-A-TC 1009
||||||||||||||||||| || || | |||||||| || | | | | || | |
Sbjct 1270 GATGAAGGAGAAGAAATACAGCATAG-ATTGTGCTGAGAGTTATGAATCTTT-AAGACTT 1327
Query 1010 TCTTG-GAATTGA--TAGTAAAAA-A-CTTGACAAGTGTATGGGAGACCCCGATGCTGAC 1064
| || || || | || | | || | | || || || || || || || || |||||
Sbjct 1328 TTTTCAGATTT-ACCTATTGAGAAGATCAAGA-AA-TGCATTGGTGATCCTGAGGCTGA- 1383
Query 1065 TTG-GACAATCCA-GTTCTTAAGGAA--GAACAAG-ATGCTCA-AGTTGGCA-AGGGTTC 1117
| || || ||| ||||| | | || || |||| || |||| | ||||| ||| |
Sbjct 1384 TACAGAGAA-CCAAGTTCTGA-G-AACTGAGCAAGTAT-CTCAGA-TTGGCCGAGGAAAC 1438
Query 1118 AAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAACAACAGA-CAGTACCGAGGCA 1176
|||| |||||||| |||||||| || ||||| |||| ||| | || || ||||| |
Sbjct 1439 C-GGGGAGATGTTACGATATTGCCAACATTAGTCATCAATAAC-GCTCAATATCGAGGGA 1496
Query 1177 -AGTTGGAGAGGAGTGCAGTACTGAAGGCTCTATGCTCTGGTTTTGAGGAGACCA-CTGA 1234
| |||||||| | || || | ||||| ||||| |||||||| | || || | | ||
Sbjct 1497 GA-TTGGAGAGAACCGCGGTTTTAAAGGCGATATGCGCTGGTTTTAATGAAAC-ATCGGA 1554
Query 1235 ACCAGCTATATGCCTCAGCACAGATGTGGAGTCAAACGAGTGC-TTAGATAACAATGGCG 1293
|| || || ||| | | ||||| | | ||| |||| |||||| || || |||||||| |
Sbjct 1555 GCCTGCCATTTGCTTAAACACAGGTCTAGAGACAAATGAGTGCCTT-GAAAACAATGGTG 1613
Query 1294 GTTGTTGGCAAGATA-AATCAGCCAACATAACTGCTTG-CAAGGATACATTTC-GTGGAA 1350
|||| ||||| |||| || ||| ||||| |||||||| |||| | ||||| | | ||||
Sbjct 1614 GTTGCTGGCAGGATACAAA-AGCAAACATCACTGCTTGTCAAG-ACACATT-CAGAGGAA 1670
Query 1351 GAGTATGCGAGTGTCCTACAGTTGATGGTGTGCAAT-TCACAGGGGATGGTTACAGC--C 1407
|| | ||||||||||| || | ||||| |||| | | ||| || || |||| | |
Sbjct 1671 GACTCTGCGAGTGTCCGGTTGTAAAAGGTGTTCAATATAA-AGGAGACGGGTACA-CTTC 1728
Query 1408 ACTGTGA-ACCA-AGCGGGCCAGGGAGATGCACAATCAACAATGGAGGTTGTTGG 1460
| ||| | ||| | ||||| | ||| || || || |||||||||||||| |||
Sbjct 1729 A-TGT-ACACCTTAT-GGGCCTGCGAGGTGTACTATGAACAATGGAGGTTGCTGG 1780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95431236045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5