BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931216
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14835.1 | Symbols: | RING/U-box superfamily protein | chr2... 1762 0.0
> AT2G14835.1 | Symbols: | RING/U-box superfamily protein | chr2:6366888-6371034
FORWARD LENGTH=1606
Length=1606
Score = 1762 bits (954), Expect = 0.0
Identities = 1033/1072 (96%), Gaps = 2/1072 (0%)
Strand=Plus/Plus
Query 1 TCTGATCTTGTCGTTTTGCAATGGTGGTCTGCAAATGCAGAAAGGCTACCAAGCTGTATT 60
|||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 131 TCTGATCTTGTCGTTTCGCAATGGTGGTCTGCAAATGCAAAAAGGCTACCAGGCTGTATT 190
Query 61 GCTTTGTTCACAAGGTCCCTGTTTGCGGGGAATGCATTTGTTTCCCGGAGCATCAAACCT 120
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 191 GCTTTGTTCACAAGGCCCCTGTTTGCGGCGAATGCATTTGTTTCCCGGAGCATCAAACTT 250
Query 121 GTGTGGTCCGGACTTATTCAGAATGGGTGATAGATGGAGAATATGACCAGCCAAAGTGTT 180
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 251 GTGTGGTCCGGACGTATTCAGAATGGGTGATAGATGGAGAGTATGATCAGCCAAAGTGTT 310
Query 181 GTCAATGCCAAGCAACATTTGATGAGGGGGCAGGTCATCAAGTCACTCGGTTGGGTTGCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 311 GTCAATGCCAAGCAACATTTGATGAGGGGGCAGGTCATCAAGTCACTCGGTTAGGTTGCT 370
Query 241 TGCATGCTATACATACAAGTTGCCTGGTTTCGCTTATCAAGAGTTTTCCTCCTCATACTG 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGCATGCTATACATACAAGCTGCCTGGTTTCGCTTATCAAGAGTTTTCCTCCTCATACTG 430
Query 301 CACCTGCTGGTTATGTGTGCCCATCATGTAGCACACCTATATGGCCTCCTAAGATGGTAA 360
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 431 CACCTGCTGGTTATGTGTGCCCAGCATGTAGCACACCTATATGGCCTCCTATGATGGTAA 490
Query 361 AAGATGCAGGATCTCGGCTTCATGCTCTGTTAAGGGAAGTAATTACGCAGACTGGTCTTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 AAGATGCAGGATCTCGGCTTCATGCTCTGTTAAGGGAAGTAATTACGCAGACTGGTCTTG 550
Query 421 AGAAGAATTTACTTGGGAACCATCCAGTTTCTCGATCCACCGAATCTCGTAGCCCACCAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 AGAAGAATTTACTTGGGAACCATCCAGTTTCTCGATCCACCGAATCTCGTAGCCCACCAC 610
Query 481 CTGCATTTGCTTCGGATGCATTAATTAATATATCATCATCTTCTCATACACAAGAAGGGA 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 CGGCATTTGCTTCGGATGCATTAATTAATATATCATCATCTTCTCATACACAAGAAGGGA 670
Query 541 ATAACCTTCCTGATGGTTATTCAGTAGATGGAAACGGAGAATATTCCAAACCTGCGGTTT 600
||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||
Sbjct 671 ATAACCTTCCTGATGGTTATTCAGTAGCTGGAAATGGAGAATATTCCAAATCTGCGGTTT 730
Query 601 CAGAGATAGTTGAGATAGATGTTCCTGCTTCTGCTGGGAATTACATGAAAAGCTCAAGCC 660
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 731 CAGAGATAGTTGAGATAGATGTTCCTGCTTCTGCTGGGAGTTACATGAAAAGCTCAAGCC 790
Query 661 CTGGACTTGCTGCTGCTGCTGCACGTAAAGGAGTACCCGCTGTGGACAGGCAGAACTCCG 720
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 791 CTGGACTTGCTGCTGCTGCTGCACGGAAAGGAGTACCCGCTGTAGACAGGCAGAACTCCG 850
Query 721 AGACTCTATATTATGCGGACGATGAAGACGGGAATCGTAAAAAGTACTCAAGAAGAGGTC 780
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 851 AGACTCTATATTATGCAGACGATGAAGACGGCAATCGTAAAAAGTACTCAAGAAGAGGTC 910
Query 781 CT-TTCCGTCACAAGGTTCTACGGGCTTTACTACCTTTCTGGTCAAGTGCCTTACCAACT 839
|| ||| |||||||| ||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 911 CTCTTC-GTCACAAGTTTCTACGAGCTTTACTACCTTTCTGGTCTAGTGCATTACCAACT 969
Query 840 CTACCCGTGACTGCACCACCTCGTAAGGATGCAACGAAGGCAGACGATGGTTCTGAAGGC 899
||||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct 970 CTACCCGTGACAGCACCACCTCGTAAGGATGCAGCAAAGGCAGATGATGGTTCTGAAGGT 1029
Query 900 CGTGTAAGGCATCAACGGTCATCAAGAATGGATATAAGGAAAATACTAATTTTCATAGCT 959
||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1030 CGTGTAAGGCATCAACGATCATCAAAAATGGATATAAGGAAGATACTAATTTTCATAGCT 1089
Query 960 CTCATAGCGTGTATGGCAACAATGGGGATTTTATACTACAGACTTGCACTACAGGCAATT 1019
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1090 CTCATAGCGTGTATGGCAACAATGGGGATTTTATACTACAGACTCGCACTACAGGCAATT 1149
Query 1020 GGTCAAGAATTACCCGATGAGGAGCAGCGATGAGGTAATATCTTATCAGACA 1071
||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1150 GGTCAAGAACTACCCGATGAGGAGCAGCGATGAGGTAATATCGTATCAGACA 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52509770070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5