BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931218

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G66170.1 | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfa...   411    4e-114
  AT2G01810.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily...  63.9    1e-09 


> AT1G66170.1 | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfamily 
protein | chr1:24638685-24641494 REVERSE LENGTH=2495
Length=2495

 Score =  411 bits (222),  Expect = 4e-114
 Identities = 309/351 (88%), Gaps = 6/351 (2%)
 Strand=Plus/Plus

Query  73    AGCTAGAGATGATGATGGTGAGAGAATGATAGCATGTGATGTATGTGAGATATGGCAGCA  132
             |||||||||||||||||| ||||| |||||| | |||||||| |||||| ||||||| ||
Sbjct  2108  AGCTAGAGATGATGATGGCGAGAGGATGATATCTTGTGATGTTTGTGAGGTATGGCAACA  2167

Query  133   CACAAGATGTTGTGGGATTGATGATACAGATACTTTGCCTCCACTTTTTGTTTGTTCTAA  192
              ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct  2168  TACACGATGTTGTGGGATTGATGATTCAGATACTTTGCCTCCACTTTTTGTTTGTTCGAA  2227

Query  193   TTGTTGTGAAGAATTTGCAGAGCAACAGAAGAAAGTGTTGCAGCCAAAGTATGAGTTTCC  252
             ||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct  2228  TTGCTGTGAAGAATTTGCAGAGCAACAGAGGAAAGTGCTGCAGCCAAAGTATGAGTTTCC  2287

Query  253   AAGTGCAGAGAATGTGTTTCTGATTGAATCAGGTGATGATTACTTTGGAGGAGATGAGAG  312
             |||| |||||||||||||| || ||||||| |  ||||||| |||||||| |  | ||||
Sbjct  2288  AAGTTCAGAGAATGTGTTTTTGCTTGAATCTGCAGATGATTTCTTTGGAG-A--TCAGAG  2344

Query  313   ATCTCTTGGTATGATTTTTCCTGAAGAAAACTTTCTCTTACAAAACCCCTTTTTGGATCA  372
             || ||||||||||||||||||||||||||||| ||| ||  |||  |  |||||||||||
Sbjct  2345  ATGTCTTGGTATGATTTTTCCTGAAGAAAACTATCTTTTGTAAAGTCAGTTTTTGGATCA  2404

Query  373   AACATTGTGGATAAATCAATTCTTTTGTAAATGAAAC-ATGATTGTATATG  422
             ||| |||| ||||| ||||||||||||||||  |||| |  ||||||||||
Sbjct  2405  AACTTTGTAGATAA-TCAATTCTTTTGTAAACAAAACCAA-ATTGTATATG  2453


> AT2G01810.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily 
protein | chr2:347537-350179 FORWARD LENGTH=2321
Length=2321

 Score = 63.9 bits (34),  Expect = 1e-09
 Identities = 55/65 (85%), Gaps = 2/65 (3%)
 Strand=Plus/Plus

Query  73    AGCTAGAGATGATGATGGTGAGAGAATGATAGCATGTGATG-TATGTGAGATATGGCAGC  131
             |||||||||||||||||||||||||||| | || ||||||| | ||  || | ||||| |
Sbjct  1923  AGCTAGAGATGATGATGGTGAGAGAATGGTGGCTTGTGATGCT-TGCAAGGTTTGGCACC  1981

Query  132   ACACA  136
             |||||
Sbjct  1982  ACACA  1986



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20257902847


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5