BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931224

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G14870.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   363    1e-99


> AT2G14870.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr2:6391172-6391477 FORWARD LENGTH=306
Length=306

 Score =  363 bits (196),  Expect = 1e-99
 Identities = 274/311 (88%), Gaps = 8/311 (3%)
 Strand=Plus/Plus

Query  30   ATGCCTCCTCGCACGGCAAAAGACAGAA-AAAACCCCAGGCTCCCACCGGAGGTGACTCG  88
            |||||||||||||||| ||| || | || |||||||||||||||||||||||||||||||
Sbjct  1    ATGCCTCCTCGCACGGGAAAGGATA-AACAAAACCCCAGGCTCCCACCGGAGGTGACTCG  59

Query  89   CCTACTCTACGTTCGTAACCTTCCCTTTAGCATAACGAGCGAAGATATGTACGATCTCTT  148
            |||||||||| || |||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct  60   CCTACTCTACATTTGTAACCTTCCCTTTAGCATAACAAGCGAAGATACGTACGATCT-TT  118

Query  149  T-GGAAGGTACGGCGCGATCCGCCAGATTCGAATCGGTTGTGACAAGAACACGAAAGGCA  207
            | ||||||||| |  |||| || ||| |||||||||||||||| |||  ||| ||||| |
Sbjct  119  TCGGAAGGTACAGTACGATTCGTCAGGTTCGAATCGGTTGTGAAAAGGGCACAAAAGGTA  178

Query  208  CTGG-TTTCGTCGTATTCGAGGATATCTACGAAGCTAAGGAAGCTGTTGACCATCTTTCC  266
            | || ||||||||||| ||||||||||||||| |||||| ||||||| |||||||| |  
Sbjct  179  C-GGCTTTCGTCGTATACGAGGATATCTACGATGCTAAGAAAGCTGTCGACCATCTCT--  235

Query  267  GGCTTCAACATAGCGAATCGGTACCTTATTGTGCAGTATTATCAACACGCGAAGATGAGC  326
            ||||||||||||||||| ||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct  236  GGCTTCAACATAGCGAACCGGTACCTTATCGTGCACTATTACCAACATGCGAAGATGAGC  295

Query  327  AAGAAGCTTGA  337
            |||||| ||||
Sbjct  296  AAGAAGTTTGA  306



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20257902847


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5