BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931226

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G14880.1 | Symbols:  | SWIB/MDM2 domain superfamily protein ...   684    0.0  


> AT2G14880.1 | Symbols:  | SWIB/MDM2 domain superfamily protein 
| chr2:6393332-6394938 REVERSE LENGTH=877
Length=877

 Score =  684 bits (370),  Expect = 0.0
 Identities = 437/469 (93%), Gaps = 6/469 (1%)
 Strand=Plus/Plus

Query  7    ACAAAG--CACCGAAAATGGCGGTTTCTTCTGGAACATTCTCCACCTTCCTCTGCATCAA  64
            ||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  82   ACAAAGCACACCGAAAATGGCGGTTTCTTCTGGAACATTCTCCACTTTCCTCTGCATCAA  141

Query  65   AACGACATCTTTCCACAGCCCATCAACTCCTCCT-ACGTCTCTCCGGCTAGCCTCTCACC  123
            |||||||||||||| || ||||||||||||| ||  | ||||||||| | ||||||||||
Sbjct  142  AACGACATCTTTCCGCAACCCATCAACTCCT-CTGTCCTCTCTCCGGTTCGCCTCTCACC  200

Query  124  CGGCGGCTAAACTACGCTTGGTCCGAGCGGTGACATCTGCGACGGCCTCTTCCGAGCCAA  183
            |||||||||||||||||||||| |||||||| |||||||||||||  ||||| |||||||
Sbjct  201  CGGCGGCTAAACTACGCTTGGTTCGAGCGGTAACATCTGCGACGGAATCTTCAGAGCCAA  260

Query  184  CCGCAACCAATAAGAGAGTGCCACGTGGCATCATGAAGCCTAGACCAGTGTCACCGGAGA  243
            ||||||||||||||||||||||||| || |||||||| ||||||||||| ||||| ||||
Sbjct  261  CCGCAACCAATAAGAGAGTGCCACGCGGTATCATGAAACCTAGACCAGTTTCACCAGAGA  320

Query  244  TGCAAGACATCGTCGAACTTCCTGAAATCGCACGCACACAAGCTCTTAAGCGTATTTGGG  303
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  321  TGCAAGACATCGTCGAACTTCCTGAAATCGCTCGCACACAAGCTCTTAAGCGTATTTGGG  380

Query  304  CTTACATTAAAGAACATGAGCTTCAAGACCCACAAAACAAGAGAGAAATACTGTGTGATG  363
            ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct  381  CTTACATCAAAGAACATGACCTTCAGGACCCACAAAACAAGAGAGAAATACTGTGTGATG  440

Query  364  AGAAGCTGAAGAAGATATTCGAAGGCAGAGATCGGGTAGGGTTCTTGGAGATTGCAAAGC  423
            ||||||||||||||||||||||||| ||||||||||| |||||| | |||||||||||||
Sbjct  441  AGAAGCTGAAGAAGATATTCGAAGGAAGAGATCGGGTTGGGTTCCTAGAGATTGCAAAGC  500

Query  424  TCATCGGTCCTCACTTCCTCTGATGGAAT-TT-CCGCGGAACTTTATTT  470
            ||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct  501  TCATCGGTCCTCACTTCCTCTGATGGATTGTTTCCGCGGAACTTTATTT  549



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22354195415


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5