BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg931232 Length=637 Score E Sequences producing significant alignments: (Bits) Value AT1G30825.1 | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD sub... 274 8e-73 AT5G52560.1 | Symbols: ATUSP, USP | UDP-sugar pyrophosphorylase... 193 2e-48 > AT1G30825.1 | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD subunit p34-Arc | chr1:10960941-10963182 FORWARD LENGTH=1305 Length=1305 Score = 274 bits (148), Expect = 8e-73 Identities = 185/203 (91%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 245 TCTTGATAAAGTTGTGGAGCTAAATTATCAGTGGATTGCATTTGATGATGTTTGTTACCA 304 ||||||||||| ||||||||| ||||||| ||||||| ||||||||||||| ||||||| Sbjct 228 TCTTGATAAAGCAGTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCA 287 Query 305 TGTTCAGGTGACAGTGAAGAATCCAAACCTCTTGTTGCTTGT-GGTTTCGTTACCAAATC 363 ||||||||||||| ||||||||||||| || ||||||||| | ||||||||||||||||| Sbjct 288 TGTTCAGGTGACAATGAAGAATCCAAATCTGTTGTTGCTT-TCGGTTTCGTTACCAAATC 346 Query 364 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCATTAGGAGCTATAGAAGCCATTAAAG 423 |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 347 CACCACCTGAAGCAATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAAA 406 Query 424 CTACTTACAAGACTGGTTTTCAA 446 | |||||| ||| ||||||||| Sbjct 407 CCACTTACGGGACAGGTTTTCAA 429 > AT5G52560.1 | Symbols: ATUSP, USP | UDP-sugar pyrophosphorylase | chr5:21330639-21334811 FORWARD LENGTH=2375 Length=2375 Score = 193 bits (104), Expect = 2e-48 Identities = 112/116 (97%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 444 CAAGAGGTTGAAGTATTGTCTCATATCACATGGAAACCCAAATGGGGAATGATCTTCTCT 503 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1775 CAAGAGGTTGAAGTATGGTCTCGTATCACATGGAAACCCAAATGGGGAATGATCTTCTCT 1834 Query 504 GATATCAAAAAGAAAGTCAGCAGGAACTGCGAGGTCTCTCAGAGATCCACGATGGC 559 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 1835 GATATCAAAAAGAAAGTCAGCGGGAACTGCGAGGTCTCTCAGAGATCCACAATGGC 1890 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30743297964 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5