BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931233
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04620.1 | Symbols: | Cation efflux family protein | chr2:1... 320 2e-86
AT1G27750.1 | Symbols: | nucleic acid binding | chr1:9657385-9... 318 6e-86
AT2G20580.1 | Symbols: RPN1A, ATRPN1A | 26S proteasome regulato... 141 1e-32
> AT2G04620.1 | Symbols: | Cation efflux family protein | chr2:1610506-1612902
REVERSE LENGTH=2397
Length=2397
Score = 320 bits (173), Expect = 2e-86
Identities = 202/216 (94%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 863 GAAGATGGACTCAGAGAGGGAGTTTCTAGTTACGTTTCTATGCACTATTGTGTTGGAACT 922
||||| ||||||||||||||||||||| || ||||||||||| ||||| || ||||||||
Sbjct 1011 GAAGAAGGACTCAGAGAGGGAGTTTCTTGTAACGTTTCTATGTACTATAGTATTGGAACT 1070
Query 923 CTTTTATTTTCCTGAGCTATCTCTTTGGGGATTGTTG-TTGTGTGGTTTGTTGCTTTATA 981
||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 1071 CTTCTATTTTCCTGAGCTATCTCTTTGGGGATTGTTGCTT-TGTGGTTTGTTGCTTTACA 1129
Query 982 TTGCTGTTAGAGAGTTGGACTCTGTGTATTCAGATTATCAAGAGATTGGGATGGAATCGC 1041
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1130 TTGCTGTTAGAGAGTTGGAGTCTGTGTATTCAGATTATCAAGAGATTGGTATGGAATCGC 1189
Query 1042 CCGAGTCGTTTTCCACCATGTTTATGAAGCCTATCC 1077
| |||||||||||||| |||||||||||||||||||
Sbjct 1190 CTGAGTCGTTTTCCACTATGTTTATGAAGCCTATCC 1225
> AT1G27750.1 | Symbols: | nucleic acid binding | chr1:9657385-9661958
FORWARD LENGTH=3476
Length=3476
Score = 318 bits (172), Expect = 6e-86
Identities = 208/225 (92%), Gaps = 3/225 (1%)
Strand=Plus/Plus
Query 129 CCTGAATCTCAGCCTCCG---CCACCGCAATTAGAATCCCAATCCCCTTCTACGGTGGTT 185
||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 92 CCTGAATCTCACCCTCCGCCACCACCGCAACTAGAATCCCAATCCCCTTCTACGGTGGTA 151
Query 186 AGCTCGTTCCCAGCTCCGGTGACGCCGTCGCCTCCATCTCAGGAGGAAATTCAAACCAGA 245
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 152 AGCTCGTTCCCGGCTCCGGTGACACCGTCGCCTCCATCTCAGGAGGAAATTCAAACGAGA 211
Query 246 AGCAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTCAAATCTTCT 305
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 212 AGTAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTTAAATCTTGT 271
Query 306 ATTGGTCAGAGAGATGGTGGTGGGTGCTCTGCGAATCTTGAGCAA 350
||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 272 GTTGCTCAGAGAGATGGTGGCGGCCGCTCTGCGAATCTTGAGCAA 316
Score = 99.0 bits (53), Expect = 9e-20
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 50 CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT 102
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT 350
> AT2G20580.1 | Symbols: RPN1A, ATRPN1A | 26S proteasome regulatory
subunit S2 1A | chr2:8858988-8864865 FORWARD LENGTH=3065
Length=3065
Score = 141 bits (76), Expect = 1e-32
Identities = 91/98 (93%), Gaps = 1/98 (1%)
Strand=Plus/Plus
Query 397 GAA-AGGACTTGGAACTAAAGCAGAACCTTGAGCTCTATGTCGAGAGGGTTCAGGATCCC 455
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 344 GAAGAGGACTTGGAACTAAAGCAGAACCTTGAGCTCTATGTTGAGAGGGTTCAGGATCCT 403
Query 456 AATCCCGAGTTGCAGAAGGCTGCTCTTGAAAGCATGAG 493
||||| || |||||||||||||| ||||| ||||||||
Sbjct 404 AATCCGGAATTGCAGAAGGCTGCCCTTGAGAGCATGAG 441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55672404405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5