BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931239

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20140.1 | Symbols:  | AAA-type ATPase family protein | chr2...   169    2e-41


> AT2G20140.1 | Symbols:  | AAA-type ATPase family protein | chr2:8692700-8695084 
FORWARD LENGTH=1615
Length=1615

 Score =  169 bits (91),  Expect = 2e-41
 Identities = 107/115 (93%), Gaps = 0/115 (0%)
 Strand=Plus/Plus

Query  52   AAGGAGATCGGAAACCAGATGATGGTGACAAGAAGGAGAAGAAGTTCGAACGAGTCTCAC  111
            ||||||||||||||||||||| ||| || |||||||||||||||||||||| || | |||
Sbjct  71   AAGGAGATCGGAAACCAGATGGTGGAGAGAAGAAGGAGAAGAAGTTCGAACCAGCCGCAC  130

Query  112  CACCTGCTCGTGTTGGGAGGAAGCAACGGAAGCAGAAAGGACTTGAAGCGGCGGC  166
            ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct  131  CACCTGCTCGTGTAGGGAGGAAGCAACGGAAGCAGAAAGGACCTGAAGCGGCGGC  185



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16085679680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5