BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931243
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15220.1 | Symbols: | Plant basic secretory protein (BSP) f... 699 0.0
AT2G15130.1 | Symbols: | Plant basic secretory protein (BSP) f... 627 5e-179
AT2G15170.1 | Symbols: | Plant basic secretory protein (BSP) f... 433 1e-120
> AT2G15220.1 | Symbols: | Plant basic secretory protein (BSP)
family protein | chr2:6608659-6609506 FORWARD LENGTH=848
Length=848
Score = 699 bits (378), Expect = 0.0
Identities = 534/605 (88%), Gaps = 28/605 (5%)
Strand=Plus/Plus
Query 29 TCACAAAATCTTCCTTGTAATCTCTCTAATGCTCGCCGTCTCATTGGTTAATGCTGTTGA 88
|||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 39 TCACAAAATCTTTTTTGTAATCTCTCTGATGCTCGTTGTCTCATTAGTTAATGCTGTTGA 98
Query 89 CTTCTCAGTCGTCGACACCACCGGCGACTCT-CCTGGAGGAAGGAGATTCC-GGGATGAG 146
|| ||| |||||||||| |||| |||||| || |||||||||||||||| |||| |||
Sbjct 99 CTACTCGGTCGTCGACAATTCCGGTGACTCTACC-GGAGGAAGGAGATTCCGGGGA-GAG 156
Query 147 ATCGGCGGCGCCAGTTATGGCGA-ACAAACACTGAGATCTGCAACGGACTTCGTGTGGGG 205
||||| ||| || || ||| | ||| ||||| |||||||| || ||||| |||||| |
Sbjct 157 ATCGGTGGCATAAGCTACGGC-ACACAGACACTAAGATCTGCGACAGACTTTGTGTGGCG 215
Query 206 TTTGTTCCAACAAACTAACCCTTCAGACAGAAGGGACA-TTA-AAATGATCACACTGTTC 263
||||||||||||||| |||||||||||||||| | || ||| ||| |||||||||||||
Sbjct 216 TTTGTTCCAACAAACCAACCCTTCAGACAGAA-AGTCAGTTACAAA-GATCACACTGTTC 273
Query 264 ATGGAGAACGGTAATGGCGTGGCCTACAACTCGAACTCGGGAAACGAGATACATTTCAAC 323
|||||||||||| | || || || ||||||| || | |||||||||||||||||||
Sbjct 274 ATGGAGAACGGTGACGGAGTAGCGTACAACT----CT--GCAAACGAGATACATTTCAAC 327
Query 324 GCGGGATATCTCGCGGGTGTATCGGGAGATGTAAAGAGGGAATTTACCGGTGTAGTTTAT 383
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 GTGGGATATCTCGCGGGTGTATCGGGAGATGTAAAGAGGGAATTTACCGGTGTAGTTTAT 387
Query 384 CACGAGGTGGTCCATTCTTGGCAATGGAA----------C-GG-TCCGGGTGGGCTTATC 431
|| |||||||||||||||||||| ||||| | || ||||||||||||||||
Sbjct 388 CATGAGGTGGTCCATTCTTGGCAGTGGAACGGTGCGGGTCGGGCTCCGGGTGGGCTTATC 447
Query 432 GAAGGGATAGCGGATTACGTGAGGCTGAAAGCGGGTTACGCTCCAAGCCATTGGGTCGGG 491
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 448 GAAGGGATAGCGGATTACGTGAGGCTGAAAGCGGGTTACGCTCCAAGTCATTGGGTCGGG 507
Query 492 CCTGGTCGTGGTGATAGATGGGACCAAGGTTATGATGTTACGGCGAGGTTTTTGGATTAT 551
||||||||||||||||| ||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct 508 CCTGGTCGTGGTGATAGGTGGGATCAAGGTTATGACGTTACCGCGAGGTTCTTGGATTAT 567
Query 552 TGTAACGATTTGAGGAATGGGTTTGTGGCCGAGCTGAACAAGAAGATGAGGAATGGTTAT 611
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TGTAACGGTTTGAGGAATGGGTTTGTGGCCGAGCTGAACAAGAAGATGAGGAATGGTTAT 627
Query 612 AGTGA 616
|||||
Sbjct 628 AGTGA 632
> AT2G15130.1 | Symbols: | Plant basic secretory protein (BSP)
family protein | chr2:6564945-6566004 FORWARD LENGTH=1060
Length=1060
Score = 627 bits (339), Expect = 5e-179
Identities = 527/614 (86%), Gaps = 28/614 (5%)
Strand=Plus/Plus
Query 6 CAAAAGAACaaaaaaaTGGCTTGTCACAAAATCTTCCTTGTAATCTCTCTAATGCTCGCC 65
|||||| | ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 197 CAAAAG-A-AAAAAAATGGCTTGTCACAAAATTTTCCTTGTAATATCTCTAATGCTCGCT 254
Query 66 GTCTCATTGGTTAATGCTGTTGACTTCTCAGTCGTCGACACCACCGGCGACTCTCCTGGA 125
||||||||||| | ||| ||||||||||| || ||||||| || |||||||||||||||
Sbjct 255 GTCTCATTGGTCAGTGCAGTTGACTTCTCTGTTGTCGACAATACTGGCGACTCTCCTGGA 314
Query 126 GGAAGGAGATTCCGGGATGAGATCGGCGGCGCCAGTTATGGCGAACAAACACTGAGATCT 185
||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| |
Sbjct 315 GGAAGGAGATTCCGGAATGAGATCGGCGGCGTGAGTTATGGCGAACAATCACTGAGAGAT 374
Query 186 GCAACGGACTTCGTGTGGGGTTTGTTCCAACAAACTAACCCTTCAGACAGAAGGGACATT 245
|||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| ||
Sbjct 375 GCAACGGACTTCACGTGGCGTTTGTTCCAACAAACTAACCCTTCAGACAGAAAGGACGTT 434
Query 246 A-AAATGATCACACTGTTCATGGAGAACGGTAATGGCGTGGCCTACAACTCG-AACTCGG 303
| ||| ||||||||| |||||||||||| |||| ||| | || |||| |||| || |
Sbjct 435 ACAAA-GATCACACTCTTCATGGAGAACAGTAACGGCATAGCATACAGCTCGCAA---G- 489
Query 304 GAAACGAGATACATTTCAACGCGGGATATCTCGCGGGTGT-ATCGGGAGATGTAAAGAGG 362
| ||||||||||| ||||||||||| ||||| || || | || | |||||| ||||
Sbjct 490 -A--CGAGATACATTACAACGCGGGATCTCTCGTGGATGACAAAGG-ATATGTAAGGAGG 545
Query 363 GAATTTACCGGTGTAGTTTATCACGAGGTGGTCCATTCTTGGCAATGGAACGGT-C---- 417
| ||||||||| || ||||||||||||||||||||||||||||| ||||||||| |
Sbjct 546 GGATTTACCGGGGTGGTTTATCACGAGGTGGTCCATTCTTGGCAGTGGAACGGTGCAGGT 605
Query 418 CGGG-T--GGG----CTTATCGAAGGGATAGCGGATTACGTGAGGCTGAAAGCGGGTTAC 470
|||| | ||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 606 CGGGCTCCGGGAGGGCTTATCGAAGGGATCGCGGATTACGTGAGGCTGAAAGCGGGTTAT 665
Query 471 GCTCCAAGCCATTGGGTCG-GGCCTGGTCGTGGTGATAGATGGGACCAAGGTTATGATGT 529
| | | || |||||||| | |||||||| |||||||||| ||||| || ||||| |||||
Sbjct 666 GTTGCGAGTCATTGGGT-GAGGCCTGGTGGTGGTGATAGGTGGGATCAGGGTTACGATGT 724
Query 530 TACGGCGAGGTTTTTGGATTATTGTAACGATTTGAGGAATGGGTTTGTGGCCGAGCTGAA 589
|| || ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 725 CACCGCTAGGTTTTTGGAGTATTGTAACGATTTGAGGAATGGATTTGTGGCGGAGCTGAA 784
Query 590 CAAGAAGATGAGGA 603
||||||||||||||
Sbjct 785 CAAGAAGATGAGGA 798
> AT2G15170.1 | Symbols: | Plant basic secretory protein (BSP)
family protein | chr2:6587570-6588235 FORWARD LENGTH=666
Length=666
Score = 433 bits (234), Expect = 1e-120
Identities = 410/490 (84%), Gaps = 32/490 (7%)
Strand=Plus/Plus
Query 4 AACAAAAGA-ACaaaaaaaTGGCTTGTCACAAAATCTTCCTTGTAATCTCTCTAATGCTC 62
||| ||||| | |||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 74 AAC-AAAGATAAAAAAAAATGGCTTGTCACGAAATCTTCCTTGTAATCTGTCTAATGCTC 132
Query 63 GCCGTCTCAT-TGGTTAATGCTGTTGACTTCTCAGTCGTCGACACCACCGGCGACTCTCC 121
|| ||||| | |||| ||||| |||||||||| || ||||||| || |||||||||||
Sbjct 133 GCAGTCTC-TATGGTCAATGCAGTTGACTTCTTTGTTGTCGACAATACTGGCGACTCTCC 191
Query 122 TGGAGGAAGGAGATTCCGGGATGAGATCGGCGGCGCCAGTTATGGCGAACAAACACTGAG 181
||||||||||| ||| || |||||||||||||||| |||||||||| ||||| || ||||
Sbjct 192 TGGAGGAAGGAAATTTCGAGATGAGATCGGCGGCGTCAGTTATGGCAAACAATCAGTGAG 251
Query 182 ATCTGCAACGGACTTCGTGTGGGGTTTGTTCCAACAAACTAACCCTTCAGACAGAAGGGA 241
||||||||| |||||| |||| |||||||||||||||||||||||| |||||||| ||
Sbjct 252 ATCTGCAACAGACTTCACGTGGCGTTTGTTCCAACAAACTAACCCTTTAGACAGAA-AGA 310
Query 242 -CATTA-AAATGATCACACTGTTCATGGAGAACGGTAATGGCGTGGCCTACAACTCGAAC 299
||||| ||| |||||||| ||||| ||||| |||| |||||||||||||| |||||
Sbjct 311 CCATTACAAA-CATCACACTCTTCATAGAGAATAGTAACAGCGTGGCCTACAACACGAAC 369
Query 300 TCGGGAAACGAGATACA-TTTCAACGCGGGATATCTCGCGGGTGTA-TCGGGAGATGTAA 357
| |||||| |||||||| ||||||||| ||| |||||||||| | ||||||||||| |
Sbjct 370 TTGGGAAAGGAGATACATTTTCAACGCTAGATCTCTCGCGGGT-AACTCGGGAGATGT-A 427
Query 358 AGAGG--GAATTTACCGGTGTAG-TTTATCACGAGGTGGTCCATTCTTGGCAATGGAACG 414
|| || | ||||||||| || | ||||||||||||||| |||||||||||| ||| ||
Sbjct 428 AG-GGTTGGATTTACCGGGGT-GATTTATCACGAGGTGGCCCATTCTTGGCAGTGGTTCG 485
Query 415 GT----C----CGGG-T------GGGCTTATCGAAGGGATAGCGGATTACGTGAGGCTGA 459
|| | |||| | ||||||||||||||||||||||||||||||||| | |
Sbjct 486 GTGCGGCTGATCGGGTTCCAGGAGGGCTTATCGAAGGGATAGCGGATTACGTGAGGTTAA 545
Query 460 AAGCGGGTTA 469
|||| |||||
Sbjct 546 AAGCCGGTTA 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30894000405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5