BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931244
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15220.1 | Symbols: | Plant basic secretory protein (BSP) f... 1138 0.0
AT2G15130.1 | Symbols: | Plant basic secretory protein (BSP) f... 730 0.0
AT2G15120.1 | Symbols: | pseudogene, disease-resistance family... 527 6e-149
> AT2G15220.1 | Symbols: | Plant basic secretory protein (BSP)
family protein | chr2:6608659-6609506 FORWARD LENGTH=848
Length=848
Score = 1138 bits (616), Expect = 0.0
Identities = 691/728 (95%), Gaps = 2/728 (0%)
Strand=Plus/Plus
Query 1 AATACAAGCAAAAGACAAAGATGACGTTTCACAAAATCTTTTTTGTAATCTCTCTAATGC 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 11 AATACAAGCAAAATACAAAGATGACGTTTCACAAAATCTTTTTTGTAATCTCTCTGATGC 70
Query 61 TCGTTGTCTCATTGGTTAATGCTGTTGACTACTCGGTCGTCGACAATACCGGTGACTCTG 120
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 71 TCGTTGTCTCATTAGTTAATGCTGTTGACTACTCGGTCGTCGACAATTCCGGTGACTCTA 130
Query 121 CCGGTGGAAGGAGATTCCGGGGAGAGATCGGTGGTATAACCTACGGCATACAGTCACTAA 180
|||| ||||||||||||||||||||||||||||| |||| |||||||| |||| ||||||
Sbjct 131 CCGGAGGAAGGAGATTCCGGGGAGAGATCGGTGGCATAAGCTACGGCACACAGACACTAA 190
Query 181 GATCTGCGACAGACTTCGTGTGGCGTTTGTTCCAACAAACCAACCCTTCGGACAGAAAGT 240
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 191 GATCTGCGACAGACTTTGTGTGGCGTTTGTTCCAACAAACCAACCCTTCAGACAGAAAGT 250
Query 241 CCGTTACGAAA-ATCACACTGTTCATGGAGAACGGTGACGGCGTAGCGTACAACTCTGGA 299
| ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 251 CAGTTAC-AAAGATCACACTGTTCATGGAGAACGGTGACGGAGTAGCGTACAACTCTGCA 309
Query 300 AACGAGATACATTTCAACGCGGGATATCTCGCGGGTGTATCAGGAGATGTAAAGAGGGAA 359
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 310 AACGAGATACATTTCAACGTGGGATATCTCGCGGGTGTATCGGGAGATGTAAAGAGGGAA 369
Query 360 TTTACCGGTGTAGTTTATCACGAGGTGGTCCATTCTTGGCAGTGGAACGGTGCGGGTCGG 419
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 370 TTTACCGGTGTAGTTTATCATGAGGTGGTCCATTCTTGGCAGTGGAACGGTGCGGGTCGG 429
Query 420 GCTCCCGGTGGTCTTATCGAAGGTATAGCGGATTACGTGAGGCTGAAAGCGGGTTACGCT 479
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 430 GCTCCGGGTGGGCTTATCGAAGGGATAGCGGATTACGTGAGGCTGAAAGCGGGTTACGCT 489
Query 480 CCAAGCCATTGGGTCGGGCCCGGTCGTGGTGATAGGTGGGATCAGGGTTATGACGTTACT 539
||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 490 CCAAGTCATTGGGTCGGGCCTGGTCGTGGTGATAGGTGGGATCAAGGTTATGACGTTACC 549
Query 540 GCGAGGTTTTTGGATTATTGTAACGATTTGAGGAATGGATTTGTGGCAGAGCTGAACAAG 599
|||||||| |||||||||||||||| |||||||||||| |||||||| ||||||||||||
Sbjct 550 GCGAGGTTCTTGGATTATTGTAACGGTTTGAGGAATGGGTTTGTGGCCGAGCTGAACAAG 609
Query 600 AAGATGAGGAATGGTTATAGTGATGCCTTCTTCGTTGATTTGCTTGGGAAAGACGTTAAT 659
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 610 AAGATGAGGAATGGTTATAGTGATGGCTTCTTCGTTGATTTGCTTGGGAAAGACGTGAAT 669
Query 660 CAACTATGGAGAGAGTACAAGGCCAAGTATGGTCAATGAATACAAACGATATAACATAAT 719
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 670 CAATTATGGAGAGAGTACAAGGCCAAGTATGGTCAATGAATACAAACGATACAAAATAAT 729
Query 720 CCCAATAT 727
| ||||||
Sbjct 730 CTCAATAT 737
> AT2G15130.1 | Symbols: | Plant basic secretory protein (BSP)
family protein | chr2:6564945-6566004 FORWARD LENGTH=1060
Length=1060
Score = 730 bits (395), Expect = 0.0
Identities = 613/716 (86%), Gaps = 23/716 (3%)
Strand=Plus/Plus
Query 9 CAAAAG-ACAAAGATGACGTT-TCACAAAATCTTT-TTTGTAATCTCTCTAATGCTCGTT 65
|||||| | ||| ||| | || ||||||||| ||| ||||||| ||||||||||||| |
Sbjct 197 CAAAAGAAAAAAAATGGC-TTGTCACAAAAT-TTTCCTTGTAATATCTCTAATGCTCGCT 254
Query 66 GTCTCATTGGTTAATGCTGTTGACTACTCGGTCGTCGACAATACCGGTGACTCTGCC-GG 124
||||||||||| | ||| ||||||| ||| || ||||||||||| || |||||| || ||
Sbjct 255 GTCTCATTGGTCAGTGCAGTTGACTTCTCTGTTGTCGACAATACTGGCGACTCT-CCTGG 313
Query 125 TGGAAGGAGATTCCGGGGA-GAGATCGGTGGTATAACCTACGGC-ATACAGTCACTAAGA 182
||||||||||||| || | |||||||| || | | || ||| | ||| ||||| |||
Sbjct 314 AGGAAGGAGATTCC-GGAATGAGATCGGCGGCGTGAGTTATGGCGA-ACAATCACTGAGA 371
Query 183 TCTGCGACAGACTTCGTGTGGCGTTTGTTCCAACAAACCAACCCTTCGGACAGAAAGTCC 242
||| || |||||| ||||||||||||||||||||| |||||||| ||||||||| |
Sbjct 372 GATGCAACGGACTTCACGTGGCGTTTGTTCCAACAAACTAACCCTTCAGACAGAAAGGAC 431
Query 243 GTTACGAAA-ATCACACTGTTCATGGAGAACGGTGACGGCGTAGCGTACAACTCTGGAA- 300
||||| ||| |||||||| |||||||||||| || ||||| |||| |||| ||| | ||
Sbjct 432 GTTAC-AAAGATCACACTCTTCATGGAGAACAGTAACGGCATAGCATACAGCTC-GCAAG 489
Query 301 ACGAGATACATTTCAACGCGGGATATCTCGCGGGTGTATC--AGGAGATGTAAAGAGGGA 358
|||||||||||| ||||||||||| ||||| || || | | |||| |||||| |||||
Sbjct 490 ACGAGATACATTACAACGCGGGATCTCTCGTGGATG-A-CAAAGGATATGTAAGGAGGGG 547
Query 359 ATTTACCGGTGTAGTTTATCACGAGGTGGTCCATTCTTGGCAGTGGAACGGTGCGGGTCG 418
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 548 ATTTACCGGGGTGGTTTATCACGAGGTGGTCCATTCTTGGCAGTGGAACGGTGCAGGTCG 607
Query 419 GGCTCCCGGTGGTCTTATCGAAGGTATAGCGGATTACGTGAGGCTGAAAGCGGGTTACGC 478
|||||| || || ||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 608 GGCTCCGGGAGGGCTTATCGAAGGGATCGCGGATTACGTGAGGCTGAAAGCGGGTTATGT 667
Query 479 TCCAAGCCATTGGGTCG-GGCCCGGTCGTGGTGATAGGTGGGATCAGGGTTATGACGTTA 537
| | || |||||||| | |||| ||| ||||||||||||||||||||||||| || || |
Sbjct 668 TGCGAGTCATTGGGT-GAGGCCTGGTGGTGGTGATAGGTGGGATCAGGGTTACGATGTCA 726
Query 538 CTGCGAGGTTTTTGGATTATTGTAACGATTTGAGGAATGGATTTGTGGCAGAGCTGAACA 597
| || ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 727 CCGCTAGGTTTTTGGAGTATTGTAACGATTTGAGGAATGGATTTGTGGCGGAGCTGAACA 786
Query 598 AGAAGATGAGGAATGGTTATAGTGATGCCTTCTTCGTTGATTTGCTTGGGAAAGACGTTA 657
|||||||||||| || || | ||||| |||||| |||||||||||||||||||||||||
Sbjct 787 AGAAGATGAGGAGTGACTACAATGATGGCTTCTTTGTTGATTTGCTTGGGAAAGACGTTA 846
Query 658 ATCAACTATGGAGAGAGTACAAGGCCAAGTATGGTCAATGAATACAAACGATATAA 713
||||||| |||||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 847 ATCAACTCTGGAGAGAGTACAAGGCCAACTATGGTCAATGAATACAAA-G-TATAA 900
> AT2G15120.1 | Symbols: | pseudogene, disease-resistance family
protein / fatty acid elongase-related, similar to fatty acid
elongase 1 (FAE1) (Arabidopsis thaliana) GI:881615; similar
to NtPRp27 (GI:5360263) (Nicotiana tabacum)similar to R
14 protein (GI:27764542) (Glycine max); contains Pfam profile
PF04450: Plant Basic Secretory Protein; blastp match of 71%
identity and 6.0e-20 P-value to GP|18674893|emb|CAD23312.1||AX358183
unnamed protein product {synthetic construct} | chr2:6557367-6558936
FORWARD LENGTH=1570
Length=1570
Score = 527 bits (285), Expect = 6e-149
Identities = 325/344 (94%), Gaps = 3/344 (1%)
Strand=Plus/Plus
Query 1 AATACAAGCAAAAGACAAAGATGACGTTTCACAAAATCTTTTTTGTAATCTCTCTAATGC 60
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1023 AATACATGCAAAATACAAAGATGACGTTTCACAAAATCTTTTTTGTAATCTCTCTGATGC 1082
Query 61 TCGTTGTCTCATTGGTTAATGCTGTTGACTACTCGGTCGTCGACAATACCGGTGACTCTG 120
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1083 TCGTTGTCTCATTAGTTAATGCTGTTGACTACTCGGTCGTCGACAATTCCGGTGACTCTA 1142
Query 121 CCGGTGGAAGGAGATTCCGGGGAGAGATCGGTGGTATAACCTACGGCATACAGTCACTAA 180
|||| ||||||||||||||||||||||||||||| |||| |||||||| |||| ||||||
Sbjct 1143 CCGGAGGAAGGAGATTCCGGGGAGAGATCGGTGGCATAAGCTACGGCACACAGACACTAA 1202
Query 181 GATCTGCGACAGACTTCGTGTGGCGTTTGTTCCAACAAACCAACCCTTCGGACAGAAAGT 240
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1203 GATCTGCGACAGACTTTGTGTGGCGTTTGTTCCAACAAACCAACCCTTCAGACAGAAAGT 1262
Query 241 CCGTTACGAAA-ATCACACTGTTCATGGAGAACGGTGACGGCGTAGCGTACAACTCTGGA 299
| ||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1263 CAGTTAC-AAAGATCACACTGTTCATGGAGAACGGTGACGGAGTAGCGTACAACTCTGGA 1321
Query 300 AACGAGATACATTTCAACGCGGGATATCTCGCGGGTGTAT-CAG 342
||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1322 AACGAGATACATTTCAACGTGGGATATCTCGCGGGTGTATACAG 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35565776076
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5