BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931246

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G15230.1 | Symbols: ATLIP1, LIP1 | lipase 1 | chr2:6612581-6...   200    4e-51


> AT2G15230.1 | Symbols: ATLIP1, LIP1 | lipase 1 | chr2:6612581-6615395 
FORWARD LENGTH=1458
Length=1458

 Score =  200 bits (108),  Expect = 4e-51
 Identities = 145/162 (90%), Gaps = 6/162 (4%)
 Strand=Plus/Plus

Query  1    CAGTTCCGTCTCCGGCGACGATGAAA------CTCGTCGCCGTTTTGACCACTTTTACGA  54
            |||| ||||| |||||||||||||||      ||||||||||| |||||| || ||||||
Sbjct  66   CAGTCCCGTCACCGGCGACGATGAAATGGTTGCTCGTCGCCGTATTGACCTCTCTTACGA  125

Query  55   TCTTCTACGGCGAAACACAGTCCCATCTCCTCCATGGATCTCCGGTCAATTCTCTCTGCG  114
            |||||| || |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  126  TCTTCTCCGCCTTAACACAGTCCCATCTCCTCCATGGATCTCCGGTCAATTCTCTCTGCG  185

Query  115  CTGATCTCATTGATCCCGCTAATTACACCTGCACTGAACACA  156
            ||||||||||| |||||||||||||| |||||||||||||||
Sbjct  186  CTGATCTCATTCATCCCGCTAATTACTCCTGCACTGAACACA  227



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9154845882


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5