BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931248
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15240.1 | Symbols: | UNC-50 family protein | chr2:6615525-... 1332 0.0
> AT2G15240.1 | Symbols: | UNC-50 family protein | chr2:6615525-6618974
REVERSE LENGTH=1326
Length=1326
Score = 1332 bits (721), Expect = 0.0
Identities = 772/797 (97%), Gaps = 2/797 (0%)
Strand=Plus/Plus
Query 1 TCAGGAACAAGGGAGGAGAAGATGTTGCCCACAACTTCCAGATCTCGTTCTTCATCTTCT 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 TCAGAAACAAGGGAGGAGAAGATGTTGCCCACAACTTCCAGATCTCGTTCTTCATCTTCT 151
Query 61 TCATCCCGAGCTAATCCAATGTTCCTTCAGTACTTTCGTCGTATCGTCAAGTGGCAGCAA 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 152 TCATCCCGAGCTAATCCAATGTTCCTTCAGTACTTTCGTCGTATCGTTAAGTGGCAGCAA 211
Query 121 ATGGATGTTGAATATACTTTCTGGCAAATGCTTAACCTTTGTACATCTCCGAAAGTTGTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 ATGGATGTTGAATATACTTTCTGGCAAATGCTTAACCTTTGTACATCTCCGAAAGTTGTC 271
Query 181 TATCAACACACCAAGTATCACAAACAAACTAAGAACCAATGGGCACGTGATGACCCTGCG 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 TATCAACACACTAAGTATCACAAACAAACTAAGAACCAATGGGCACGTGATGACCCTGCG 331
Query 241 TTTATTGTGATCTGTAGCCTGCTTCTTGTTGTTGCCGCTGTAGCCTATTGTGTCACGTAT 300
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 332 TTTATTGTGATCTGTAGCCTGCTTCTTGTTGTTGCAACTGTAGCCTATTGTGTCACGTAT 391
Query 301 GACCATAGTGGCTCTCATGCTGTCGTCGTAGTCGTTTCAGTTTTGCTCACCCATTTCTTA 360
||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 392 GACCATAGTAGCTCTCATGCCGTCGTCGTAGTCGTTTCAGTTTTGTTCACCCATTTCTTA 451
Query 361 ATCACCGGAACAGTTATAGCTACATGCTGTTGGTTTTTGACAAACTCTTACCTTCGCGAG 420
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 452 ATCACCGGAGCAGTTATAGCTACATGCTGTTGGTTTTTGACAAATTCTTACCTTCGCGAG 511
Query 421 GAGACTCCAAACAGTCATGTGGTGGAACAACGCGTTGAATGGCTGTATACATTTGATGTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 GAGACTCCAAACAGTCATGTGGTGGAACAACGCGTTGAATGGCTGTATACATTTGATGTT 571
Query 481 CACTGCAACTCGTTCTTTCCAATGTTTGTGCTGCTCTACGTCGTACATTATTTCTTATCA 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 572 CACTGCAACTCGTTCTTTCCAATGTTTGTGCTGCTCTACGTCGTACATTACTTCTTATCA 631
Query 541 CCACTGCTGATAGCGCATGGATTCATCCCTTTACTACTATCGAATCTGCTTTTCATGGTC 600
|| || |||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 632 CCGCTCCTGATAGCACACGGATTCATCCCTTTACTGCTATCGAATCTGCTTTTCATGGTC 691
Query 601 GGGGCTTCGTACTACCATTATCTTAACTTCCTAGGATATGACGTGCTTCCATTTTTGGAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 GGGGCTTCGTACTACCATTATCTTAACTTCCTAGGATATGACGTGCTTCCATTTTTGGAG 751
Query 661 CGAACAACATTCTTCCTCTACCCAATCGGGGTCGTGATTGTCCTGTCCCCTATTCTGATC 720
||||||||||||||||||||||||||||| || || ||||||||||| |||||||| |||
Sbjct 752 CGAACAACATTCTTCCTCTACCCAATCGGAGTTGTCATTGTCCTGTCTCCTATTCTTATC 811
Query 721 TTAAGCGGATTCAACCCGTCAAGATACTTCATGAACTTGTACTTCAGCCAAAGGTTATAA 780
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 812 TTAAGCGGATTCAACCCGTCAAGATATTTCATGAACATGTACTTCAGCCAAAGGTTATAA 871
Query 781 AAAA--CAGCCACATCA 795
|||| |||||||||||
Sbjct 872 AAAAAACAGCCACATCA 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38931463925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5