BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931258

Length=584
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G15260.1 | Symbols:  | RING/U-box superfamily protein | chr2...   429    1e-119


> AT2G15260.1 | Symbols:  | RING/U-box superfamily protein | chr2:6630528-6634008 
FORWARD LENGTH=1089
Length=1089

 Score =  429 bits (232),  Expect = 1e-119
 Identities = 448/545 (82%), Gaps = 44/545 (8%)
 Strand=Plus/Plus

Query  34   ACGTTGATCATGTTAATGAAGAGAATCGTGATGCTAC-GAATCTTGTTGATGAAGAGAAT  92
            ||||||| | |||| |||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct  164  ACGTTGAACCTGTTGATGAAGAGAATCGTGATGCT-CTGAATCCTGTTGATGAAGAGAAT  222

Query  93   CATGACTCTCTGAATCATGTTGATGAAGAGAATCGTGATTC-TCTGAATCTTGTTGATGA  151
            ||||||||| |||||||||||| | || |||||| |||||| ||| |||| ||||||| |
Sbjct  223  CATGACTCTATGAATCATGTTGCTAAACAGAATCATGATTCTTCT-AATCATGTTGATCA  281

Query  152  AGAGATTCGTGATTCTCTGAATCCTATTGATGAAGAGAACCGCCGTGATTCTCCGAATGA  211
            ||||||||||||||||| ||||| |||||||||||||||    | ||||||||| ||  |
Sbjct  282  AGAGATTCGTGATTCTCAGAATCTTATTGATGAAGAGAA---TCATGATTCTCC-AA--A  335

Query  212  CTCGGATTCTCCCAGTGACTCTGATTCTCCCAGTGACTTGGATTCGTGTTTGATTTGTCA  271
                ||  ||  ||  || | | | |||  | |||||||||||| ||||| |||||||| 
Sbjct  336  ---AGA--CT--CA--GA-T-T-A-TCT--CGGTGACTTGGATTTGTGTTCGATTTGTCG  380

Query  272  TGGGACTCTAGTCAATGATAATGATGTTCATCGAACACTTGTGACACTTAAATGTGCTCA  331
            |||| || | |||||||| ||||||||||| |||||||| || ||||||||||||| |||
Sbjct  381  TGGGGCTTTGGTCAATGAGAATGATGTTCAACGAACACTGGTTACACTTAAATGTGTTCA  440

Query  332  CAAGTTTCATCC-CGATTGTATTGGCTCAGCATATAATGCAAAGGGTTTCATGGAATGTC  390
            ||||||||| || ||| ||||| |||||||| |||||||||||||| |||||||||||||
Sbjct  441  CAAGTTTCA-CCTCGACTGTATCGGCTCAGCCTATAATGCAAAGGGCTTCATGGAATGTC  499

Query  391  CAAACTGTAGGAATATAGAACCAGGTCAATGGC-GTTTTGCAAACGGCACCCATTTTAAT  449
            |||||||||| ||||||||||| ||||| |||| ||||| || |||| || || || |||
Sbjct  500  CAAACTGTAGAAATATAGAACCGGGTCATTGGCAGTTTT-CAGACGGTACTCACTTCAAT  558

Query  450  GCCGATAATATGATTGCTGGTGATGATGAACAAGAAGAAGACAATGATCCTGGATACTTC  509
             || ||  ||||||||||  | |||| ||| |||||||||||||||||||||||| ||| 
Sbjct  559  CCCAATGGTATGATTGCTAATAATGAAGAAGAAGAAGAAGACAATGATCCTGGATCCTTT  618

Query  510  TCTC--A--A---T----T----GGTGTGCCCTTTTGGATGCTTAGGTCAACAATATCCT  554
            ||||  |  |   |    |    |||||||||||||||||||||||||||||  ||||||
Sbjct  619  TCTCAGATGATTGTAAAATCAGAGGTGTGCCCTTTTGGATGCTTAGGTCAACGGTATCCT  678

Query  555  TTTGA  559
            |||||
Sbjct  679  TTTGA  683



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28080888173


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5