BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931262
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15320.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1871 0.0
> AT2G15320.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr2:6666316-6667704 REVERSE LENGTH=1389
Length=1389
Score = 1871 bits (1013), Expect = 0.0
Identities = 1118/1168 (96%), Gaps = 9/1168 (1%)
Strand=Plus/Plus
Query 43 gccttcttcctctcctcctcctcctcttcctcttctcctccGCCGA-TACTCTGACTTCA 101
|||||||| || | || ||||||||| ||||||||||||| ||||| | ||||||| |||
Sbjct 37 GCCTTCTT-CT-T-CTTCTCCTCCTCCTCCTCTTCTCCTCTGCCGACT-CTCTGACGTCA 92
Query 102 CCATCCGACGTGTCAGCTTTAAAAGCTTTCAAAGCCACCGTGAAACCAAACTCAATCCCA 161
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 93 CCATCCGACGTGTCAGCTTTAAAAGCTTTCAAAGCCACCGTGAAACCCAACTCAATCCCA 152
Query 162 CCGTGGTCTTGTCTTGCAAGCTGGGACTTTACTGTCTCCGACCCATGTGCTTCACCACGT 221
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 CCGTGGTCTTGTCTCGCTAGCTGGGACTTTACTGTCTCCGACCCATGTGCTTCACCACGT 212
Query 222 CGAACACATTTCACTTGCGGCATCACTTGCTCGTCTGACTCCACACGTGTGACCCAACTC 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 CGAACACATTTCACTTGCGGCATCACTTGCTCGTCTGACTCCACACGTGTGACCCAACTC 272
Query 282 ACTCTCGACCCGGCCGGCTACACGGGTCGTCTCACGCCTCTTATCTCCGGCCTCACAGAG 341
||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 273 ACTCTCGACCCAGCCGGGTACACGGGTCGTCTCACGCCTCTCATCTCCGGCCTCACAGAG 332
Query 342 CTTCTCACGCTCGATCTCGCCGAGAACAACTTCTACGGTCTAATCCCATCCTCCATCTCC 401
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 333 CTTCTCACGCTCGATCTCGCCGAGAACAACTTCTACGGCCTAATCCCATCCTCCATCTCC 392
Query 402 TCCCTCCAC-AGCCTCAAGACCTTGATCCTCCGGTCCAACTCGTTTTCCGGGTCATTACC 460
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 393 TCCCTC-ACCAGCCTCAAGACCTTGATCCTCCGATCCAACTCGTTTTCCGGGTCATTACC 451
Query 461 CGACTCAGTAACTCGACTCAACTCACTCGAATCCATTGACATATCTCACAACTCACTCAC 520
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 452 CGACTCAGTAACTCGACTCAACTCACTCGAATCCATTGACATATCTCACAACTCTCTCAC 511
Query 521 CGGGCCGCTTCCCAAAACAATGAACTCGCTCTCCAATCTCCGACAGCTCGATCTTAGCTA 580
|||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 512 CGGGCCGCTTCCAAAAACAATGAACTCGCTTTCAAATCTCCGACAACTCGATCTTAGCTA 571
Query 581 CAACAAACTCACCGGAGCCATCCCAAAGCTTCCGAGAAACCTCATCGACTTAGCTTTAAA 640
|||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 572 CAACAAGCTCACCGGAGCCATCCCAAAGCTTCCGAAAAACCTCATCGATTTAGCTTTAAA 631
Query 641 GGCGAATACTTTATCAGGACCCATCTCAAAAGACTCATTCACCGAGTCAACTCAGCTAGA 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 632 GGCGAATACTTTATCAGGACCCATCTCAAAAGACTCATTCACCGAGTCAACTCAGCTCGA 691
Query 701 AATCGTCGAACTCGCTGAGAACTCATTCACCGGAACTCTCGGAGCTTGGTTCTTCTTACT 760
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 692 AATCGTCGAAATCGCTGAGAACTCATTCACCGGAACACTCGGAGCTTGGTTCTTCCTACT 751
Query 761 CGAATCAATCCAACAAGTAGATCTAGCGAACAACACTCTCACAGGCATCGAAGTCCTCCC 820
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 752 TGAATCAATCCAACAAGTCGATCTAGCGAACAACACTCTCACAGGCATCGAAGTCCTCCC 811
Query 821 TCCAAAACTCGCCGGAGAAAACAACCTAGTAGCTGTAGAGCTAGGATTCAACCAAATCAG 880
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 812 TCCAAACCTCGCCGGAGAAAACAACCTCGTAGCTGTAGAGCTAGGATTCAACCAAATCAG 871
Query 881 AGGAAACGCTCCGGCGAGTTTCGCGGCGTACCCGAGACTTTCGTCACTGTCTATGAGATA 940
|||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||
Sbjct 872 AGGAAACGCTCCGGCGAGTTTCGCGGCGTATCCAAGACTTTCTTCACTATCTATGAGATA 931
Query 941 CAACATGCTTCACGGTGTGATTCCGTCGGAATACGAACGGAGCAAGACGTTGAGACGGCT 1000
|||| ||||||||||||| || |||||||||||||||||||||||||| || ||||||||
Sbjct 932 CAACGTGCTTCACGGTGTTATACCGTCGGAATACGAACGGAGCAAGACATTAAGACGGCT 991
Query 1001 TTACTTAGACGGAAACTTCTTGACGGGAAAACCTCCGGCGAGATTTGTGA-AACCAGACG 1059
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 992 TTACTTAGACGGGAACTTCTTGACGGGAAAACCTCCGGCGAGATTTGTGAGAAC-AGACG 1050
Query 1060 CAGAAGTTATGGGAAGTTTGGGGAATAATTGTCTACGGGGATGTCCAGGGAAAGCTAAGA 1119
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1051 CAGAAGTAATGGGAAGTTTGGGGAATAATTGTCTACAGGGATGTCCAGGGAAAGCTAAGA 1110
Query 1120 TGTGTGCTCCGTCGCAGAAACCATTTTACATTTGTAAGCAAGCTTATGGTGGAAAACCAA 1179
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TGTGTGCTCCATCGCAGAAACCATTTTACATTTGTAAGCAAGCTTATGGTGGAAAACCAA 1170
Query 1180 AGTCTTAGTTTTGTCGGTGTCGGTGACT 1207
||||||||||||||||||||||||||||
Sbjct 1171 AGTCTTAGTTTTGTCGGTGTCGGTGACT 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59286843645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5