BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931265
Length=604
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15345.1 | Symbols: | Plant invertase/pectin methylesterase... 556 6e-158
AT3G17230.1 | Symbols: | invertase/pectin methylesterase inhib... 274 7e-73
AT3G17225.1 | Symbols: | Plant invertase/pectin methylesterase... 267 1e-70
> AT2G15345.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr2:6684411-6685069 REVERSE
LENGTH=659
Length=659
Score = 556 bits (301), Expect = 6e-158
Identities = 494/585 (84%), Gaps = 22/585 (4%)
Strand=Plus/Plus
Query 32 TTGTGTCATAAGACATATATTTTCAATTCTTCCTCTTCTCGTTATTCTATCAATCACCCC 91
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGTCTCATAAGAAATGTATTTTCAATTCTTCCTCTTCTCGTTATTCTATCAATCACCCC 60
Query 92 TTTGTCTTCATC-TTA-T-TC----TAT--AAATGACAAAATCACAAAAGAATTAATCAA 142
| ||||||||| ||| | || | | |||||||||||| | |||||| ||| ||||
Sbjct 61 TGCGTCTTCATCATTATTGTCTTTGTCTCCAAATGACAAAATTAGAAAAGATTTAGTCAA 120
Query 143 CCAACTCTGCTCACAACCGACAATTTACAACCATTTCTGTGTCGCTTGGGTAACCTCTGT 202
|||||||||||||||||||||||||| ||| || |||||| |||||||| |||||||| |
Sbjct 121 CCAACTCTGCTCACAACCGACAATTTCCAAGCAGTTCTGTCTCGCTTGGCTAACCTCTTT 180
Query 203 CGCACAA-ACGTTCAACCTTGACCTGCAAGGTCTTGTCTATCTGCTCTATCAAAAGACGG 261
| || || ||||||| ||||||| |||||||||||||| || || |||||||| ||||||
Sbjct 181 CCCA-AACACGTTCACCCTTGACATGCAAGGTCTTGTCAATATGGTCTATCAACAGACGG 239
Query 262 AATTGTTGGGCTCTAAGAACCTAGAGATGATTAAAGACTTAGAGAGAACCGAGACTGAGC 321
|| |||||||| ||||||||||||||||||||||| |||||| |||||||||| | |
Sbjct 240 AACGGTTGGGCTATAAGAACCTAGAGATGATTAAAGGCTTAGATAGAACCGAGAATTATT 299
Query 322 CAAAGCTCAAGATCCCA-TATGGGTCTTGTGTGAAAGAATATGAATTATCGAAT-AGAGC 379
| |||||||||| | ||| ||||||| |||||||||||||||||||| ||| || ||
Sbjct 300 CGAAGCTCAAGA-AGTATTATAGGTCTTGCGTGAAAGAATATGAATTATCCAATAAG-GC 357
Query 380 AATCGAGGAAGCTAAAGAGTTTGCGAGTGCGAACTCGAAGGCATACCTGTCAGCATCTAA 439
|||||||||||||||| |||||| | | ||| ||||| |||| |||||| ||| |
Sbjct 358 GATCGAGGAAGCTAAAGGGTTTGC-A-----AGCTCTAAGGCGTACCGGTCAGCTTCTGA 411
Query 440 GGCGGCTTCTAGAGCCTTCGATAGTATATCTATGTGCGAAGCTTATCTTGAAGGACTCAA 499
||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 412 GGCGGCTGCTAGAGCCTTTGATAGTATATCTATGTGCGAAGCTTATCTTGAAGGAAGCAA 471
Query 500 ATTGCCGGATCATGTCTCGACACGCAATTTGTGGTTTGAAGGAATGTGTAACATTGACAA 559
| |||| | ||||| |||||||||| | |||||||||| |||||||| ||||||||||
Sbjct 472 AACCCCGGGTTATGTCACGACACGCAACTGGTGGTTTGAAAGAATGTGTGACATTGACAA 531
Query 560 AATTTTCTCCGACCTTTTAATTTGATTCTGTGTTTTTATTTACAT 604
||| ||| |||||||||| |||| | || ||||| ||||||||
Sbjct 532 AATATTCACCGACCTTTTGATTTC-TGCTAAGTTTTAATTTACAT 575
> AT3G17230.1 | Symbols: | invertase/pectin methylesterase inhibitor
family protein | chr3:5886381-5889236 REVERSE LENGTH=1056
Length=1056
Score = 274 bits (148), Expect = 7e-73
Identities = 380/488 (78%), Gaps = 32/488 (7%)
Strand=Plus/Plus
Query 21 ATGGCTTGTTCTTGTGTCATAAGACATATATTTTCAATTCTTCCTCTTCTCGTTATTCTA 80
||||||| | |||| |||| |||| | |||||||| ||||||||||||||||| |||||
Sbjct 1 ATGGCTTATCCTTGCGTCAAAAGAAACGTATTTTCACTTCTTCCTCTTCTCGTTCTTCTA 60
Query 81 TCAATCACCCCTTTGTCTTCATCTT-ATTCTATAAATGACAAAATCACAAAAGAATTAAT 139
||||||||||||||||||||||||| || || | |||||||||||||||||| ||| |
Sbjct 61 TCAATCACCCCTTTGTCTTCATCTTTAT-CTCCGAGTGACAAAATCACAAAAGATTTACT 119
Query 140 -CAACCAACTCTGCTCACAA-CCG-ACAATTTACAACCATTTCTGTGTCGCTTGGGTAAC 196
|| | |||||||| || | ||| ||| || || ||| ||||| || ||||| ||||
Sbjct 120 TCAGC-AACTCTGCGCA-AGTCCGCACA-TTGACCACCCCTTCTGCATCACTTGGCTAAC 176
Query 197 CTCTG-TCGC-ACAAACGTTCAACCTTGACCTGCAAGGTCTTGTCTATCT-GCTCTATC- 252
| ||| || | |||| | |||| ||| ||||| ||||||||| || || | | ||| ||
Sbjct 177 CGCTGATC-CTACAA-CATTCACCCTCGACCTACAAGGTCTTCTCGATTTAG-TCT-TCC 232
Query 253 AAAAGACGGAATTGTTGGGCTCTAAGAACCTAGAGATGATTAAAGACTTAGAGAGAACCG 312
|||||||| |||||||||||| ||||| ||||| | ||| |||| | || |||||||
Sbjct 233 AAAAGACGCAATTGTTGGGCTATAAGAGCCTAGCGGCGATGAAAGGCGCAGTGAGAACC- 291
Query 313 AG-ACTGAGCCAAAGCTCAAGATCC-CATATGGGTCTTGTGTGAAAGAATATGAATTATC 370
| ||||| || | ||||| || || |||||| | |||| |||| ||| |||||| | |
Sbjct 292 ACTACTGATCCGACGCTCAGGA-CCTCATATGAGACTTGCGTGAGAGATTATGAAGGAGC 350
Query 371 GAATAGAGCAATCGAGGAAGCTAAAGAGTTTGCGAGTGCGAACTCGAAGGCATACCTGTC 430
| || ||| |||||||||||| ||| || || || | ||| ||||| |||| ||
Sbjct 351 CATTAAAGCGATCGAGGAAGCTCAAGGGTCTGTGA---C---CTCTAAGGCGTACCAGTT 404
Query 431 AGCATCT-AAGGCGGCTTCTAGAGCCTTCGATAGTATATCTA-TGTGCGAAGCTTA-TCT 487
||||||| |||| |||| ||| |||||| | ||||||||| | |||| |||||| | | |
Sbjct 405 AGCATCTCAAGG-GGCTGCTAAAGCCTTTGTTAGTATATC-AGTGTGTGAAGCTCAGT-T 461
Query 488 TGAAGGAC 495
||||||||
Sbjct 462 TGAAGGAC 469
> AT3G17225.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr3:5884374-5884931 REVERSE
LENGTH=558
Length=558
Score = 267 bits (144), Expect = 1e-70
Identities = 439/575 (76%), Gaps = 45/575 (8%)
Strand=Plus/Plus
Query 21 ATGGCTTGTTCTTGTGTCATAAGACATATATTTTCAATTCTTCCTCTTCTCGTTATTCTA 80
||||||| | |||| |||| |||| | |||||||| |||||||||| ||| || |||||
Sbjct 1 ATGGCTTATCCTTGCGTCAAAAGAAACGTATTTTCACTTCTTCCTCTACTCCTTCTTCTA 60
Query 81 TCAATCACCCCTTTGTCTTCATCTTAT-TCTATAAATGACAAAATCACAAAAGAA-TTAA 138
||||||||||||||||||||||||| | ||| | ||||||| |||||||| | ||
Sbjct 61 TCAATCACCCCTTTGTCTTCATCTT-TGTCTCCGAGTGACAAAGTCACAAAA-ACCTTCT 118
Query 139 TCAACCA-ACTCTGCTCACAACCG-ACAATTTACAACCAT-TTCTGTGTCGCTTGGGTAA 195
| | || ||||||| || ||||| ||| || ||| ||| ||||| || ||||| |||
Sbjct 119 T-ATCCCGACTCTGCACAGAACCGCACA-TTGACA-CCAACTTCTGCATCACTTGGCTAA 175
Query 196 CCTCTG-TCGCA-CAAACGT-TCAACCTTGACCTGCAAGGTCTTGTCTATCT-GCTCTAT 251
||||| || || ||| | | | | ||| ||||| ||||||||| || || | | ||| |
Sbjct 176 TCTCTGATC-CAACAA-CATAT-ACCCTCGACCTACAAGGTCTTCTCGATTTAG-TCT-T 230
Query 252 C-AAAAGACGGAATTGTTGGGCTCTAAGAACCTAGAGATGATTAAAGACTTAGAGAGA-A 309
| |||||||| |||| |||||| ||||||||||| | ||| |||| || || || | |
Sbjct 231 CCAAAAGACGCAATTATTGGGCAATAAGAACCTAGCGGCGATGAAAGGCTCAGTGA-ATA 289
Query 310 CCGA-GACTGAGCCAAAGCTCAAGATCCCATATGGGTCTTGTGTGAAAGAATATGAATTA 368
|| | |||||| || | |||||||||||||| || | |||| |||| ||| |||||| |
Sbjct 290 CC-ACGACTGATCCGACGCTCAAGATCCCATTTGAGACTTGCGTGAGAGATTATGAAGGA 348
Query 369 TCGAATAGAGCAATCGAGGAAGCTAAAGAGTTTGCGAGTGCGAACTCGAAGGCATACCTG 428
| | || ||| |||||||||||| ||| ||||| || | ||| ||||| |||| |
Sbjct 349 GCCATTAAAGCGATCGAGGAAGCTCAAGGGTTTGTGA---C---CTCTAAGGCGTACCCG 402
Query 429 TCAGCATCT-AAGGCGGCTTCTAGAGCCTTCGAT-AGTATATCTA-TGTGCGAAGCTTA- 484
| ||||||| |||| |||| ||| ||||||| || |||||||| | |||| |||||| |
Sbjct 403 TTAGCATCTCAAGG-GGCTGCTAAAGCCTTC-ATTAGTATATC-AGTGTGTGAAGCTCAG 459
Query 485 TCTTGAAGGACTCAAAT-TGCCGGATCATGTCTCGACACGCAATTTGTGGTTTGAAG-GA 542
| ||| |||| || | |||||| | |||| | | || |||||||| ||| ||| ||
Sbjct 460 T-TTGCAGGA---AA-TGTGCCGGCTTATGTAGCAAAACTCAATTTGTTTTTT-AAGAGA 513
Query 543 ATGTGTAACATTGACAAAATTTTCTCCGACCTTTT 577
|||||||| ||||| | ||||||||||| ||||
Sbjct 514 ATGTGTAATATTGATAGGGTTTTCTCCGACGTTTT 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29085571113
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5