BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931271
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15440.1 | Symbols: | Protein of unknown function (DUF579) ... 1598 0.0
> AT2G15440.1 | Symbols: | Protein of unknown function (DUF579)
| chr2:6743613-6744830 REVERSE LENGTH=1218
Length=1218
Score = 1598 bits (865), Expect = 0.0
Identities = 971/1020 (95%), Gaps = 16/1020 (2%)
Strand=Plus/Plus
Query 13 aaaaa-aaaaTGAAGAGCAACACAAACACTAGTCTAATTCTCTTCCACCACCACTCTCCA 71
||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 41 AAAAATAAAATGAAGAGCAACACAAACACTAATCTGATTCTCTTCCACCACCACTCTCCA 100
Query 72 CTAACTTCAAAATCATCTTCCGCCGTCGCCGCCGCGAATCACCACCGCctcttattcatc 131
||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 101 CTAACTTCAAAATCACCCTCCGCCGTCGCCGCCGCGAATCACCACCGTTTCTTATTCATC 160
Query 132 ttcttcatctctttcttcactctcctcttctctttctctctcttctcctcctcctcaatc 191
|||||| ||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 161 TTCTTCCTCTCTTTCTTCACTCTCCTCTTCTCTTTCTCTCTC-T-T-CTCCTCCTCAATC 217
Query 192 cactccaccacaacctctcactctctctcctca--t--ct-c-cctcctctcttccacca 245
|||||||||||| |||||||||||||||||||| | || | |||||||||||||||||
Sbjct 218 CACTCCACCACATCCTCTCACTCTCTCTCCTCATCTCCCTCCTCCTCCTCTCTTCCACCA 277
Query 246 ccagtcctcgccgcactcctccacTACACTTCCTCATCACCACCAAACACATCAATGTCC 305
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 278 CCAGTCCTCGCCGCACTTCTCCACTACACTTCCTCATCACCACCAAACACATCTATGTCC 337
Query 306 TTTCTTGAACTCTCCACCATCTCCTCCATCATTCACTCTCATGGCCCAACTTGTAACCTC 365
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 338 TTTCTTGAACTCTCCACCATCTCCAACATCATTCACTCTCATGGCCCAGCTTGTAACCTC 397
Query 366 TTAATCTTTGGACTAACTCACGAATCTCTTCTCTGGAGATCTATAAACTTCCAAGGCCGT 425
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 398 TTAATCTTTGGACTAACTCACGAATCTCTTCTCTGGAGATCTATCAACTTCCAAGGCCGT 457
Query 426 A-TGGTTTTCGTTGATGAGAGTCCTTACTCTGTTTCTAAGTTCGAACAGAGTAACCCTGG 484
| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 458 ACT-GTTTTCGTTGATGAGAGTCCTTACTCTGTTTCTAAATTCGAACAGAGTAACCCTGG 516
Query 485 AGTTGAAGCTTATGAGGTTGTTTACTCAACTAAAGTCTCTCAAGCTGGGAAGCTTCTTGG 544
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 517 AGTTGAAGCTTACGAGGTTGTTTACTCAACTAAAGTCTCTCAAGCTAAGAAGCTTCTTGG 576
Query 545 TTATTACAAGACCCGACCCGAATGTCGACCCGCTCAGAATCTTTTGTTCTCTGATTGTAA 604
||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||
Sbjct 577 TTATTACAAGACCCGACCCGAGTGTAGACCCGTTCAGAATCTTTTGTTCTCTGATTGTAA 636
Query 605 ATTGGGTATTAACGATTTGCCTAATTTTGTTTATGAGATTGATTGGGATGTGATTTTGAT 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 ATTGGGTATTAACGATTTGCCTAATTTTGTTTATGAGATTGATTGGGATGTGATTTTGAT 696
Query 665 TGATGGGCCTCGTGGGTATGCTTCTGATTCTCCGGGAAGGATGGCTCCGATCTTTACTTC 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 TGATGGGCCTCGTGGGTATGCTTCTGATTCTCCGGGAAGGATGGCTCCGATCTTTACTTC 756
Query 725 GGCGGTTTTAGCAAAAAGTAAAGATTTTGGGAAGAAGACGAAGA---CTGATGTTTTTGT 781
||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 757 TGCGGTTTTAGCAAAAAGTAAAGATTTTGGGACGAAGACGAAGAAGACTGATGTTCTTGT 816
Query 782 ACATGAGTTTGGGAGAAAGATTGAGAGAGTTTATAGTGAAGAGTTTCTATGTGAAGAGAA 841
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 817 ACATGAGTTTGGGAGAAAGATTGAGAGAGTGTACAGTGAGGAGTTTCTATGTGAAGAGAA 876
Query 842 TTTGGTTGAAGTCGTCGGAGATTTAGGGCATTTTGTTGTGGCGGCGGCGGAGGAAAGGGA 901
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 877 TTTGATTGAAGTGGTCGGAGATTTAGGGCATTTTGTTGTGGCGGCGGCGGAGGAAAGAGA 936
Query 902 GAGTTTTGGTAATGGGTTTTGTCGGAATTCGACGAGATTGTCGGAGACTTTTACGGCGGT 961
||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 937 GAGTTATGGTGATGGGTTTTGTCGGAATTCGACGAGATTGTCGGAGAGTTTTACGGCGGT 996
Query 962 GAGTGGTGGCGATGAAGAAAAAGTTGGTGTTGATGATGAGTGAAA-GTGGGTTTGGTTTT 1020
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 997 GAGTGGTGGCGATGAAGAAAAAGTTGGTGTTGATGATGAGTGAAAAGTGGGTTTGGTTTT 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50183912853
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5