BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg931277 Length=2011 Score E Sequences producing significant alignments: (Bits) Value AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pr... 1426 0.0 AT2G15500.1 | Symbols: | RNA-binding protein | chr2:6763707-67... 206 9e-52 > AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding protein 2 | chr4:16336387-16340098 FORWARD LENGTH=2441 Length=2441 Score = 1426 bits (772), Expect = 0.0 Identities = 1266/1501 (84%), Gaps = 47/1501 (3%) Strand=Plus/Plus Query 128 CAGTTTGGT-ACTACATCGCTTTACGTTGGAGATCTGGA-TCCAAACGTGACGGATTCGC 185 ||||||||| || || |||||||| || || ||||| || | | || |||||||| |||| Sbjct 439 CAGTTTGGTAAC-ACGTCGCTTTATGTGGGGGATCTCGATTTC-AATGTGACGGACTCGC 496 Query 186 AGCTTTTTGATGCGTTTAGCCAGATGGGTCA-AGTTGT-ATCAGTTCGAGTTTGTAGAGA 243 ||||||| ||||||||| |||| |||||| | || || | | ||||| || ||||| || Sbjct 497 AGCTTTTCGATGCGTTTGGCCAAATGGGT-ACTGTGGTCA-CCGTTCGTGTCTGTAGGGA 554 Query 244 TTTAGCT-ACTCGGAGATCTCTTGGTTATGGTTATGTTAACTTCACCAGTCCTCAAGATG 302 ||| | | ||||| |||||||||| ||||| || ||||||||||||| ||| ||||| | Sbjct 555 TTT-GGTCACTCGCCGATCTCTTGGCTATGGATACGTTAACTTCACCAATCCCCAAGACG 613 Query 303 CTGCAAGAGCGATCCAGGAACTGAACTATATACCTCTTAATGGGAAACCTGTTAGGGTTA 362 |||||||||||||||| |||||||| || ||||||||| |||| |||||| ||||||||| Sbjct 614 CTGCAAGAGCGATCCAAGAACTGAATTACATACCTCTTTATGGAAAACCTATTAGGGTTA 673 Query 363 TGTATTCTCATCGTGATCCTAGTGTTCGTCGAAGTGGTGCAGGAAATATTTTTATCAAGA 422 |||||||||||||||||||||||||||| |||||||| || || || |||||||| |||| Sbjct 674 TGTATTCTCATCGTGATCCTAGTGTTCGCCGAAGTGGCGCTGGCAACATTTTTATTAAGA 733 Query 423 ATTTGGACAAATCCATTGACCACAAAGCGTTGCATGATACGTTTTC-TGTGTTTGGGAAC 481 |||||||| | ||||| ||||||||||| |||||||||| ||||| | |||||| ||| Sbjct 734 ATTTGGACGAGTCCATCGACCACAAAGCACTGCATGATACTTTTTCATC-GTTTGGAAAC 792 Query 482 ATTATCTCGTGCAAGGTAGCTGTGGATTCTTCAGGACAATCAAAAGGCTATGGGTTTGTG 541 ||| | ||||||||||||||||| ||||||||||| || ||||||||||||||||||||| Sbjct 793 ATTGTGTCGTGCAAGGTAGCTGTCGATTCTTCAGGCCAGTCAAAAGGCTATGGGTTTGTG 852 Query 542 CAATATGA-AACTGAAGAATCTGCTCAGAAAGCTATGG-GTCAATTGAACGGTATGTTGC 599 ||||| | || |||||||||||| ||||||||||| | | || ||||||| ||||||| Sbjct 853 CAATACGCCAA-TGAAGAATCTGCCCAGAAAGCTATAGAGA-AACTGAACGGCATGTTGC 910 Query 600 TAAATGACAAGCAAGTGTATGTTGGACCTTTCCTCAGGAGGCAAGAAAGAGATTCTACTG 659 | |||||||||||||||||||| || |||||||| ||||| ||||||||||| || |||| Sbjct 911 TCAATGACAAGCAAGTGTATGTGGGTCCTTTCCTGAGGAGACAAGAAAGAGACTCCACTG 970 Query 660 GTAACAAAAC-AATATTCACCAACGTGTATGTGAAGAATCTTGCTGAATCAACCACTGAT 718 ||||||||| || ||||||||| ||||||||||||||||| || ||| || || ||| Sbjct 971 CTAACAAAACGAA-ATTCACCAATGTGTATGTGAAGAATCTCGCGGAAAGTACTACCGAT 1029 Query 719 GATGATTTGAAGAACATTTTTGGTGAGTTTGGTAAGATAACAAGTGCTGTGGTGATGAAA 778 ||||| |||||||| |||||| |||| ||| ||||||||||||||||| ||||||||| Sbjct 1030 GATGACTTGAAGAATGCTTTTGGCGAGTATGGAAAGATAACAAGTGCTGTCGTGATGAAA 1089 Query 779 GATGGAGAGGGGAAG-CCAAAGGGCTTTGGGTTTGTTAACTTTGAAAATGCCGATGATGC 837 |||||||| |||||| |||| ||||||||||||||| |||||||||||||| |||||||| Sbjct 1090 GATGGAGAAGGGAAGTCCAA-GGGCTTTGGGTTTGTCAACTTTGAAAATGCTGATGATGC 1148 Query 838 TGCTAAGGCTGTGGAGTCTCTCAATGGAAA-AACATTTGAGGATAAGGAGTGGTTTGTTG 896 ||||| ||||||||||||||||||||| | || |||||| ||||||||||||| ||||| Sbjct 1149 TGCTAGGGCTGTGGAGTCTCTCAATGGGCACAA-ATTTGATGATAAGGAGTGGTATGTTG 1207 Query 897 GTAGAGCCCAGAAGAAGTCTGAAAGGGAAATGGAACTAAAGGTTCAGT-ATGAGCAGAGT 955 ||||||||||||||||||| || ||||||| ||| ||| ||| | || |||| |||| | Sbjct 1208 GTAGAGCCCAGAAGAAGTCAGAGAGGGAAACAGAATTAAGGGTCC-GTTATGAACAGAAT 1266 Query 956 TTGAAGGAAGCTGCTGACAAGTTTCAAAGTTCTAACTTGTATGTTAAGAATTTAGATGAC 1015 |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| | Sbjct 1267 TTGAAGGAAGCTGCAGACAAGTTTCAAAGTTCAAACTTGTATGTTAAGAATTTGGATC-C 1325 Query 1016 -AGTGTTTCTGACGAGAAACTCAAAGAGCTCTTTACACCTTATGGCACTGTTACGTCTTG 1074 || |||| || |||||||| |||||| ||||| | |||| ||| || ||||| ||| | Sbjct 1326 TAGCATTTCAGATGAGAAACTTAAAGAGATCTTTTCTCCTTTTGGTACCGTTACATCTAG 1385 Query 1075 CAAGGTGATGCGGGATCCTAATGGCATAAGCAGGGGCTCGGGTTTTGTAGCATTTT-CAA 1133 |||||||||||||||||||||||| | ||||| ||||| |||||||| || ||| ||| Sbjct 1386 CAAGGTGATGCGGGATCCTAATGGAACAAGCAAAGGCTCAGGTTTTGTTGC-TTTCGCAA 1444 Query 1134 CTCCTGAAGAAGCAACCAAAGCTATGTCAGAGATGAGTGGTAAAATGATTGAAAACAAAC 1193 |||| ||||||||||| ||||||||||| || |||| ||||||||||| |||| ||| | Sbjct 1445 CTCCCGAAGAAGCAACTGAAGCTATGTCACAGTTGAGCGGTAAAATGATCGAAAGCAAGC 1504 Query 1194 CTCTCTATGTTGCTGTTGCTCAGAGAAAGGAGGATAGAAGGGCCAGACTGCAGGCTCAGT 1253 | |||||||| ||| |||| ||| | ||||| || ||||||| |||||| |||||||||| Sbjct 1505 CACTCTATGTGGCTATTGCACAGCGGAAGGAAGACAGAAGGGTCAGACTACAGGCTCAGT 1564 Query 1254 TTTCCCAAATGAGACCAGTTGCAATGCAACCACCGGTTGGTCCTCGTATGCCAATTTATC 1313 |||||||| |||| |||||||||||||| || | |||||||| || |||||| | |||| Sbjct 1565 TTTCCCAAGTGAGGCCAGTTGCAATGCAGCCGTCTGTTGGTCCCCGCATGCCAGTGTATC 1624 Query 1314 CCCCTGGTGGTCCCGGAATTGGACAACCAATGTTTTATGGTCAGGCACCTCCTACTATGA 1373 |||| |||||||| || |||||||||| |||||| ||||||||||| |||||| | |||| Sbjct 1625 CCCCGGGTGGTCCTGGTATTGGACAACAAATGTTCTATGGTCAGGCCCCTCCTGCCATGA 1684 Query 1374 TTTCTTCACAGCCCGGGTTTGGCTACCAGCAGCAGCTGGTTCCTGGAATGAGACCTGGTG 1433 || || | ||||| |||| ||| ||||| |||||||| |||||||||||||||||||||| Sbjct 1685 TTCCTCCCCAGCCTGGGTATGGATACCAACAGCAGCTTGTTCCTGGAATGAGACCTGGTG 1744 Query 1434 GAGGACCAATGCACAACTTCTTCATGCCAATGGTTCAGC-AGGGCCAGCAACGTCCTGGA 1492 | || || | | || ||||||||||| |||||||||| | || |||| ||||||||| Sbjct 1745 GGGGTCCTGTACCCAGTTTCTTCATGCCTATGGTTCAGCCACAGC-AGCAGCGTCCTGGA 1803 Query 1493 GG-G-A-GACGTCCTGGAGGGA-TCCAGCAATCTCAGCAGCAGCAGCAAGTTCCCATGAT 1548 || | | |||||||||| |||| |||| || || |||||||| | || | |||||||| Sbjct 1804 GGAGGAAGACGTCCTGG-GGGAATCCAACACTCCCAGCAGCA--A--AA-T-CCCATGAT 1856 Query 1549 GCAGCAGCAACACCAGATGCACCCAAGGGGTCGAATGTTCCGCTATCCTCAAGGCCGTGG 1608 |||||| | || |||||| ||||||||||| |||||||| ||||| ||||| ||||| Sbjct 1857 GCAGCA--A-CA---GATGCATCCAAGGGGTCGGATGTTCCGGTATCCCCAAGGGCGTGG 1910 Query 1609 T 1609 | Sbjct 1911 T 1911 > AT2G15500.1 | Symbols: | RNA-binding protein | chr2:6763707-6764751 FORWARD LENGTH=399 Length=399 Score = 206 bits (111), Expect = 9e-52 Identities = 137/150 (91%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 844 GGCTGTGGAGTCTCTCAATGGAAAAACATTTGAGGATAAGGAGTGGTTTGTTGGTAGAGC 903 |||||||||||||||||| ||||| || ||||| |||||| | ||| |||||| |||||| Sbjct 84 GGCTGTGGAGTCTCTCAAGGGAAACACGTTTGATGATAAGCAATGGGTTGTTGATAGAGC 143 Query 904 CCAGAAGAAGTCTGAAAGGGAAATGGAACTAAAGGTTCAGTATGAGCAGAGTTTGAAGGA 963 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 144 TCAGAAGAAGTCTGAAAGGGAAATGGAACTAAAGGTTCCGTATGAGCAGAGTTTGAAGGA 203 Query 964 AGCTGCTGACAAGTTTCAAAGTTCTAACTT 993 | |||||||||||||||||||| |||||| Sbjct 204 AATTGCTGACAAGTTTCAAAGTTATAACTT 233 Score = 108 bits (58), Expect = 3e-22 Identities = 77/86 (90%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 575 ATGGGTCAATTGAACGGTATGTTGCTAAATGACAAGCAAGTGTATGTTGGACCTTTCCTC 634 ||| || |||||| ||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 1 ATGAGTAAATTGATCGGCATGTTGTTAAATGACAAGCAAGTGTATGTTGGACCTTTCCTA 60 Query 635 AGGAGGCAAGAAAGAGATTCTACTGG 660 || ||||||||||| ||||||| ||| Sbjct 61 AG-AGGCAAGAAAGGGATTCTATTGG 85 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99648081825 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5