BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931277
Length=2011
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pr... 1426 0.0
AT2G15500.1 | Symbols: | RNA-binding protein | chr2:6763707-67... 206 9e-52
> AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336387-16340098 FORWARD LENGTH=2441
Length=2441
Score = 1426 bits (772), Expect = 0.0
Identities = 1266/1501 (84%), Gaps = 47/1501 (3%)
Strand=Plus/Plus
Query 128 CAGTTTGGT-ACTACATCGCTTTACGTTGGAGATCTGGA-TCCAAACGTGACGGATTCGC 185
||||||||| || || |||||||| || || ||||| || | | || |||||||| ||||
Sbjct 439 CAGTTTGGTAAC-ACGTCGCTTTATGTGGGGGATCTCGATTTC-AATGTGACGGACTCGC 496
Query 186 AGCTTTTTGATGCGTTTAGCCAGATGGGTCA-AGTTGT-ATCAGTTCGAGTTTGTAGAGA 243
||||||| ||||||||| |||| |||||| | || || | | ||||| || ||||| ||
Sbjct 497 AGCTTTTCGATGCGTTTGGCCAAATGGGT-ACTGTGGTCA-CCGTTCGTGTCTGTAGGGA 554
Query 244 TTTAGCT-ACTCGGAGATCTCTTGGTTATGGTTATGTTAACTTCACCAGTCCTCAAGATG 302
||| | | ||||| |||||||||| ||||| || ||||||||||||| ||| ||||| |
Sbjct 555 TTT-GGTCACTCGCCGATCTCTTGGCTATGGATACGTTAACTTCACCAATCCCCAAGACG 613
Query 303 CTGCAAGAGCGATCCAGGAACTGAACTATATACCTCTTAATGGGAAACCTGTTAGGGTTA 362
|||||||||||||||| |||||||| || ||||||||| |||| |||||| |||||||||
Sbjct 614 CTGCAAGAGCGATCCAAGAACTGAATTACATACCTCTTTATGGAAAACCTATTAGGGTTA 673
Query 363 TGTATTCTCATCGTGATCCTAGTGTTCGTCGAAGTGGTGCAGGAAATATTTTTATCAAGA 422
|||||||||||||||||||||||||||| |||||||| || || || |||||||| ||||
Sbjct 674 TGTATTCTCATCGTGATCCTAGTGTTCGCCGAAGTGGCGCTGGCAACATTTTTATTAAGA 733
Query 423 ATTTGGACAAATCCATTGACCACAAAGCGTTGCATGATACGTTTTC-TGTGTTTGGGAAC 481
|||||||| | ||||| ||||||||||| |||||||||| ||||| | |||||| |||
Sbjct 734 ATTTGGACGAGTCCATCGACCACAAAGCACTGCATGATACTTTTTCATC-GTTTGGAAAC 792
Query 482 ATTATCTCGTGCAAGGTAGCTGTGGATTCTTCAGGACAATCAAAAGGCTATGGGTTTGTG 541
||| | ||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 793 ATTGTGTCGTGCAAGGTAGCTGTCGATTCTTCAGGCCAGTCAAAAGGCTATGGGTTTGTG 852
Query 542 CAATATGA-AACTGAAGAATCTGCTCAGAAAGCTATGG-GTCAATTGAACGGTATGTTGC 599
||||| | || |||||||||||| ||||||||||| | | || ||||||| |||||||
Sbjct 853 CAATACGCCAA-TGAAGAATCTGCCCAGAAAGCTATAGAGA-AACTGAACGGCATGTTGC 910
Query 600 TAAATGACAAGCAAGTGTATGTTGGACCTTTCCTCAGGAGGCAAGAAAGAGATTCTACTG 659
| |||||||||||||||||||| || |||||||| ||||| ||||||||||| || ||||
Sbjct 911 TCAATGACAAGCAAGTGTATGTGGGTCCTTTCCTGAGGAGACAAGAAAGAGACTCCACTG 970
Query 660 GTAACAAAAC-AATATTCACCAACGTGTATGTGAAGAATCTTGCTGAATCAACCACTGAT 718
||||||||| || ||||||||| ||||||||||||||||| || ||| || || |||
Sbjct 971 CTAACAAAACGAA-ATTCACCAATGTGTATGTGAAGAATCTCGCGGAAAGTACTACCGAT 1029
Query 719 GATGATTTGAAGAACATTTTTGGTGAGTTTGGTAAGATAACAAGTGCTGTGGTGATGAAA 778
||||| |||||||| |||||| |||| ||| ||||||||||||||||| |||||||||
Sbjct 1030 GATGACTTGAAGAATGCTTTTGGCGAGTATGGAAAGATAACAAGTGCTGTCGTGATGAAA 1089
Query 779 GATGGAGAGGGGAAG-CCAAAGGGCTTTGGGTTTGTTAACTTTGAAAATGCCGATGATGC 837
|||||||| |||||| |||| ||||||||||||||| |||||||||||||| ||||||||
Sbjct 1090 GATGGAGAAGGGAAGTCCAA-GGGCTTTGGGTTTGTCAACTTTGAAAATGCTGATGATGC 1148
Query 838 TGCTAAGGCTGTGGAGTCTCTCAATGGAAA-AACATTTGAGGATAAGGAGTGGTTTGTTG 896
||||| ||||||||||||||||||||| | || |||||| ||||||||||||| |||||
Sbjct 1149 TGCTAGGGCTGTGGAGTCTCTCAATGGGCACAA-ATTTGATGATAAGGAGTGGTATGTTG 1207
Query 897 GTAGAGCCCAGAAGAAGTCTGAAAGGGAAATGGAACTAAAGGTTCAGT-ATGAGCAGAGT 955
||||||||||||||||||| || ||||||| ||| ||| ||| | || |||| |||| |
Sbjct 1208 GTAGAGCCCAGAAGAAGTCAGAGAGGGAAACAGAATTAAGGGTCC-GTTATGAACAGAAT 1266
Query 956 TTGAAGGAAGCTGCTGACAAGTTTCAAAGTTCTAACTTGTATGTTAAGAATTTAGATGAC 1015
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 1267 TTGAAGGAAGCTGCAGACAAGTTTCAAAGTTCAAACTTGTATGTTAAGAATTTGGATC-C 1325
Query 1016 -AGTGTTTCTGACGAGAAACTCAAAGAGCTCTTTACACCTTATGGCACTGTTACGTCTTG 1074
|| |||| || |||||||| |||||| ||||| | |||| ||| || ||||| ||| |
Sbjct 1326 TAGCATTTCAGATGAGAAACTTAAAGAGATCTTTTCTCCTTTTGGTACCGTTACATCTAG 1385
Query 1075 CAAGGTGATGCGGGATCCTAATGGCATAAGCAGGGGCTCGGGTTTTGTAGCATTTT-CAA 1133
|||||||||||||||||||||||| | ||||| ||||| |||||||| || ||| |||
Sbjct 1386 CAAGGTGATGCGGGATCCTAATGGAACAAGCAAAGGCTCAGGTTTTGTTGC-TTTCGCAA 1444
Query 1134 CTCCTGAAGAAGCAACCAAAGCTATGTCAGAGATGAGTGGTAAAATGATTGAAAACAAAC 1193
|||| ||||||||||| ||||||||||| || |||| ||||||||||| |||| ||| |
Sbjct 1445 CTCCCGAAGAAGCAACTGAAGCTATGTCACAGTTGAGCGGTAAAATGATCGAAAGCAAGC 1504
Query 1194 CTCTCTATGTTGCTGTTGCTCAGAGAAAGGAGGATAGAAGGGCCAGACTGCAGGCTCAGT 1253
| |||||||| ||| |||| ||| | ||||| || ||||||| |||||| ||||||||||
Sbjct 1505 CACTCTATGTGGCTATTGCACAGCGGAAGGAAGACAGAAGGGTCAGACTACAGGCTCAGT 1564
Query 1254 TTTCCCAAATGAGACCAGTTGCAATGCAACCACCGGTTGGTCCTCGTATGCCAATTTATC 1313
|||||||| |||| |||||||||||||| || | |||||||| || |||||| | ||||
Sbjct 1565 TTTCCCAAGTGAGGCCAGTTGCAATGCAGCCGTCTGTTGGTCCCCGCATGCCAGTGTATC 1624
Query 1314 CCCCTGGTGGTCCCGGAATTGGACAACCAATGTTTTATGGTCAGGCACCTCCTACTATGA 1373
|||| |||||||| || |||||||||| |||||| ||||||||||| |||||| | ||||
Sbjct 1625 CCCCGGGTGGTCCTGGTATTGGACAACAAATGTTCTATGGTCAGGCCCCTCCTGCCATGA 1684
Query 1374 TTTCTTCACAGCCCGGGTTTGGCTACCAGCAGCAGCTGGTTCCTGGAATGAGACCTGGTG 1433
|| || | ||||| |||| ||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 1685 TTCCTCCCCAGCCTGGGTATGGATACCAACAGCAGCTTGTTCCTGGAATGAGACCTGGTG 1744
Query 1434 GAGGACCAATGCACAACTTCTTCATGCCAATGGTTCAGC-AGGGCCAGCAACGTCCTGGA 1492
| || || | | || ||||||||||| |||||||||| | || |||| |||||||||
Sbjct 1745 GGGGTCCTGTACCCAGTTTCTTCATGCCTATGGTTCAGCCACAGC-AGCAGCGTCCTGGA 1803
Query 1493 GG-G-A-GACGTCCTGGAGGGA-TCCAGCAATCTCAGCAGCAGCAGCAAGTTCCCATGAT 1548
|| | | |||||||||| |||| |||| || || |||||||| | || | ||||||||
Sbjct 1804 GGAGGAAGACGTCCTGG-GGGAATCCAACACTCCCAGCAGCA--A--AA-T-CCCATGAT 1856
Query 1549 GCAGCAGCAACACCAGATGCACCCAAGGGGTCGAATGTTCCGCTATCCTCAAGGCCGTGG 1608
|||||| | || |||||| ||||||||||| |||||||| ||||| ||||| |||||
Sbjct 1857 GCAGCA--A-CA---GATGCATCCAAGGGGTCGGATGTTCCGGTATCCCCAAGGGCGTGG 1910
Query 1609 T 1609
|
Sbjct 1911 T 1911
> AT2G15500.1 | Symbols: | RNA-binding protein | chr2:6763707-6764751
FORWARD LENGTH=399
Length=399
Score = 206 bits (111), Expect = 9e-52
Identities = 137/150 (91%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 844 GGCTGTGGAGTCTCTCAATGGAAAAACATTTGAGGATAAGGAGTGGTTTGTTGGTAGAGC 903
|||||||||||||||||| ||||| || ||||| |||||| | ||| |||||| ||||||
Sbjct 84 GGCTGTGGAGTCTCTCAAGGGAAACACGTTTGATGATAAGCAATGGGTTGTTGATAGAGC 143
Query 904 CCAGAAGAAGTCTGAAAGGGAAATGGAACTAAAGGTTCAGTATGAGCAGAGTTTGAAGGA 963
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 144 TCAGAAGAAGTCTGAAAGGGAAATGGAACTAAAGGTTCCGTATGAGCAGAGTTTGAAGGA 203
Query 964 AGCTGCTGACAAGTTTCAAAGTTCTAACTT 993
| |||||||||||||||||||| ||||||
Sbjct 204 AATTGCTGACAAGTTTCAAAGTTATAACTT 233
Score = 108 bits (58), Expect = 3e-22
Identities = 77/86 (90%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 575 ATGGGTCAATTGAACGGTATGTTGCTAAATGACAAGCAAGTGTATGTTGGACCTTTCCTC 634
||| || |||||| ||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTAAATTGATCGGCATGTTGTTAAATGACAAGCAAGTGTATGTTGGACCTTTCCTA 60
Query 635 AGGAGGCAAGAAAGAGATTCTACTGG 660
|| ||||||||||| ||||||| |||
Sbjct 61 AG-AGGCAAGAAAGGGATTCTATTGG 85
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99648081825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5