BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931283
Length=441
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24975.1 | Symbols: | Plant self-incompatibility protein S1... 381 3e-105
AT4G24974.1 | Symbols: | Plant self-incompatibility protein S1... 342 1e-93
> AT4G24975.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr4:12843802-12844209 FORWARD LENGTH=408
Length=408
Score = 381 bits (206), Expect = 3e-105
Identities = 336/399 (84%), Gaps = 8/399 (2%)
Strand=Plus/Plus
Query 21 ATGAGTTGCTCATCGGCATTTTC-CATAATATTTAGTGTAACATTCGTGGTTTTTCTCTT 79
|||| | |||| || || |||| ||||||||| ||||| |||||| |||||||||||||
Sbjct 1 ATGAATGGCTCTTCAGC-GTTTCACATAATATTGAGTGTTACATTCATGGTTTTTCTCTT 59
Query 80 CAGCGGTCTTTGCAAGGCTAATCG-TGAGGTACAA-GTGGACATCATTAATGATATTGGT 137
| ||||| ||| ||||| | | || |||| || ||||| ||||| ||||||||||||
Sbjct 60 TGGTGGTCTCTGCGAGGCTGGT-GTTGTGGTA-AACGTGGATATCATCAATGATATTGGT 117
Query 138 TCAAATATTCAATTGGGACTACACTGCAAATCAAAGCACAAAGATCTCGGATCACATTCT 197
||||| ||||| ||||||||||||||||||| ||| |||||||||||||| |||| |||
Sbjct 118 CCAAATGTTCAACTGGGACTACACTGCAAATCGAAGGACAAAGATCTCGGACCACAATCT 177
Query 198 TTAGCCCAACATCAACATTGGGGGTTTAGAGAATCTA-TTAATTTTTGGGATACAACTCT 256
||||||| || ||||| |||||||||||| || | | || ||||||||| |||||
Sbjct 178 TTAGCCCCTCAACAACACTGGGGGTTTAGAAAAAC-ACTTGATTTTTGGGGCGTGACTCT 236
Query 257 GtttttttGTCACTTTGTATGGGAAAATCAATCTAAATGGTTTGATATTCTTGAAGCTAA 316
|||||||||||| |||| ||||||||| ||||| ||||||||||||||||||| |||
Sbjct 237 GTTTTTTTGTCATTTTGAATGGGAAAACCAATCCAAATGGTTTGATATTCTTGTTGCTGG 296
Query 317 CAGAGATAAAAATATATGTGAACATCATCCCTGTGTTTGGAGTATAAGACCTAGTGGTCC 376
||||||| ||||| ||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 297 GAGAGATAGAAATACATGTGCTGAACATCCGTGTGTTTGGAGTATAAGACCTAGTGGTCC 356
Query 377 ATGTAGATTAACGGGTCAAGAAAAATGTTTCCCATGGAA 415
||||||| |||||||| ||||||||||||||||||||||
Sbjct 357 ATGTAGACTAACGGGTAAAGAAAAATGTTTCCCATGGAA 395
> AT4G24974.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr4:12842850-12843363 FORWARD LENGTH=514
Length=514
Score = 342 bits (185), Expect = 1e-93
Identities = 349/424 (82%), Gaps = 27/424 (6%)
Strand=Plus/Plus
Query 6 AAAAAT-ATATTCATAATGAGTTGCTCATCGGCATTTTC-CATAATATTTAGTGTAACAT 63
|||||| ||||||| ||||||| |||| | |||| |||| ||| ||| | ||||| ||||
Sbjct 24 AAAAATAATATTCAAAATGAGTGGCTCTTTGGCA-TTTCACATCATAATGAGTGTCACAT 82
Query 64 TCGTGGTTTTTCTCTTCAGCGGTCTTTGCAAGGCTAATCGTGAGGTACAA-GTGGA-CAT 121
|| |||||||| |||| | ||||| ||| |||| ||||| |||| || ||||| | |
Sbjct 83 TCATGGTTTTTTTCTTTGGTGGTCTATGCGAGGC---TCGTGGGGTA-AACGTGGATC-T 137
Query 122 CATTAATGATATTGGTTCAAATATTCAATTGGGACTACACTGCAAATCAAAGCACAAAGA 181
||| |||||||||||| ||||| ||||||| ||||||||||||||||| ||| |||||||
Sbjct 138 CATCAATGATATTGGTCCAAATGTTCAATTAGGACTACACTGCAAATCGAAGAACAAAGA 197
Query 182 TCTCGGATCACATTCTTTAG-CCCAACATCAACATTGGGGGTTTAGAGAATCTATTAATT 240
|||||||||||| ||||||| | | ||||||| ||||||||||||| |||| || ||
Sbjct 198 TCTCGGATCACAATCTTTAGTCTC-TGATCAACACTGGGGGTTTAGAGCATCTCTTGGTT 256
Query 241 TTTGGGATAC--AACTCTGtttttttGTCACTTTGTATGGGAAAATCAATCTAAATGGTT 298
||| ||| | ||||| ||||||||||| |||| ||||||||| ||||| ||||||||
Sbjct 257 TTT-GGA-CCGTGACTCTTTTTTTTTGTCATTTTGAATGGGAAAACCAATCCAAATGGTT 314
Query 299 TGATATTCTTGAAGCTA-ACAGAGA-TAAAAATATATGTGAACATCATCCCTGTGTTTGG 356
||||||| ||| | | ||||||| | || || | ||| ||||| |||||||||
Sbjct 315 TGATATTTTTGTTG-AAGACAGAGATTTAACATGT-GGTG---ATCAT---TGTGTTTGG 366
Query 357 AGTATAAGACCTAGTGGTCCATGTAGATTAACGGGTCAAGAAAAATGTTTCCCATGGAAC 416
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 367 AGTATAAGACCTAGTGGTCCATGTAGACTAACGGGTCGAGAAAAATGTTTCCCATGGAA- 425
Query 417 TAAT 420
||||
Sbjct 426 TAAT 429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20961651333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5