BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931290
Length=1802
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15620.1 | Symbols: NIR1, NIR, ATHNIR | nitrite reductase 1 ... 2852 0.0
> AT2G15620.1 | Symbols: NIR1, NIR, ATHNIR | nitrite reductase
1 | chr2:6810476-6812939 FORWARD LENGTH=2110
Length=2110
Score = 2852 bits (1544), Expect = 0.0
Identities = 1704/1782 (96%), Gaps = 8/1782 (0%)
Strand=Plus/Plus
Query 24 catgacttctttctctctcactttcacatctcctctccttcctt-ct--tcctccAAACC 80
||||||||||||||||||||||||||||||||||||||| |||| || ||| |||||||
Sbjct 76 CATGACTTCTTTCTCTCTCACTTTCACATCTCCTCTCCTCCCTTCCTCCTCCACCAAACC 135
Query 81 CAAAAGATCCATCCTTGTCGCCGCCGCTCAGACCACAGCTCCGGCAGAATCCACCGCCTC 140
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 136 CAAAAGATCCGTCCTTGTCGCCGCCGCTCAGACCACAGCTCCGGCCGAATCCACCGCCTC 195
Query 141 TGTTGACGCAGATCGTCTTGAGCCAAGAGTTGAATTGAAAGATGGGTTTTTTATTCTCAA 200
|||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 196 TGTTGACGCAGATCGTCTCGAGCCAAGAGTTGAGTTGAAAGATGGTTTTTTTATTCTCAA 255
Query 201 GGAGAAGTTTCGAAAAGGGATCAATCCTCAGGAGAAGGTTAAGATTGAGAAAGAGCCAAT 260
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct 256 GGAGAAGTTTCGAAAAGGGATCAATCCTCAGGAGAAGGTTAAGATCGAGAGAGAGCCCAT 315
Query 261 GAAGTTGTTTATGGAGAATGGTATTGAAGAACTTGCTAAGAAATCTATGGAAGAGATTGA 320
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 316 GAAGTTGTTTATGGAGAATGGTATTGAAGAGCTTGCTAAGAAATCTATGGAAGAGCTTGA 375
Query 321 TAGTGAAAAGTCTTCTAAAGATGATATTGATGTTAGACTCAAGTGGCTTGGTCTCTTTCA 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 TAGTGAAAAGTCTTCTAAAGATGATATTGATGTTAGACTCAAGTGGCTTGGTCTCTTTCA 435
Query 381 CCGTAGAAAGCATCATTATGGGAAGTTTATGATGAGGTTGAAGTTACCAAATGGTGTGAC 440
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 CCGTAGAAAGCATCAGTATGGGAAGTTTATGATGAGGTTGAAGTTACCAAATGGTGTGAC 495
Query 441 TACAAGTGCACAGACTCGGTATTTAGCGAGTGTGATTAGAAAGTATGGTGAAGATGGATG 500
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 496 TACAAGTGCACAGACTCGGTATTTAGCGAGTGTGATTAGGAAGTATGGTGAAGATGGGTG 555
Query 501 TGCTGATGTGACTACTAGACAGAATTGGCAGATCCGTGGTGTTGTGTTGCCTGATGTGCC 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 TGCTGATGTGACTACTAGACAGAATTGGCAGATCCGTGGTGTTGTGTTGCCTGATGTGCC 615
Query 561 TGAGATCTTGAAAGGTCTTGCTTCTGTTGGGTTAACGAGT-TTGCAGAGTGGTATGGATA 619
|||||||||||||||||||||||||||||| ||||||||| || || |||||||||||||
Sbjct 616 TGAGATCTTGAAAGGTCTTGCTTCTGTTGGTTTAACGAGTCTT-CAAAGTGGTATGGATA 674
Query 620 ACGTGAGGAATCCGGTTGGGAATCCTATAGCTGGGATTGATCCGGAGGAGATTGTTGACA 679
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 ACGTGAGGAACCCGGTTGGGAATCCTATAGCTGGGATTGATCCGGAGGAGATTGTTGACA 734
Query 680 CGAGGCCTTACACGAATCTTCTTTCGCAGTTTATTACTGCTAATTCAGTAGGAAACCCCG 739
||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||
Sbjct 735 CGAGGCCTTACACGAATCTCCTTTCGCAGTTTATCACCGCTAATTCACAAGGAAACCCCG 794
Query 740 ATTTCACCAACTTGCCAAGGAAGTGGAATGTGTGTGTGGTGGGGACTCATGATCTCTATG 799
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 795 ATTTCACCAACTTGCCAAGAAAGTGGAATGTGTGTGTGGTGGGGACTCATGATCTCTATG 854
Query 800 AGCATCCACATATTAATGATTTGGCCTACATGCCTGCTAATAAAGATGGACGGTTTGGAT 859
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 AGCATCCACATATCAATGATTTGGCCTACATGCCTGCTAATAAAGATGGACGGTTTGGAT 914
Query 860 TCAATTTGCTTGTGGGAGGATTCTTTAGTCCCAAAAGATGTGAAGAGGCCATTCCTCTTG 919
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 915 TCAATTTGCTTGTGGGAGGATTCTTTAGTCCCAAAAGATGTGAAGAAGCGATTCCTCTTG 974
Query 920 ATGCTTGGGTCCCTGCTGATGAAGTTCTTCCACTTTGCAAAGCTGTTCTAGAGGCCTACA 979
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 975 ATGCTTGGGTCCCTGCTGATGACGTTCTTCCACTCTGCAAAGCTGTTCTAGAGGCTTACA 1034
Query 980 GAGATCTTGGAACTCGAGGAAACAGACAGAAGACAAGAATGATGTGGCTTATTGACGAAC 1039
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1035 GAGATCTTGGAACTCGAGGAAACCGACAGAAGACAAGAATGATGTGGCTTATCGACGAAC 1094
Query 1040 TTGGCGTTGAAGGATTTAGAGCTGAGGTAGAGAAGAGAATGCCAAATGGGAAACTCGAGA 1099
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1095 TTGGTGTTGAAGGATTTAGAACTGAGGTAGAGAAGAGAATGCCAAATGGGAAACTCGAGA 1154
Query 1100 GAGGATCTTCAGAGGATCTTGTGAACAAACAATGGGAGAGGAGAGACTATTTCGGAGTCC 1159
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1155 GAGGATCTTCAGAGGATCTTGTGAACAAACAGTGGGAGAGGAGAGACTATTTCGGAGTCA 1214
Query 1160 ACCCTCAGAAGCAAGAAGGTCTTAGCTTCGTGGGCCTTCATGTTCCGGTTGGAAGGCTAC 1219
|||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 1215 ACCCTCAGAAACAAGAAGGTCTTAGCTTCGTGGGGCTTCACGTTCCGGTTGGTAGGCTAC 1274
Query 1220 AAGCTGATGACATGGACGAGCTTGCTCGGTTAGCTGACACCTATGGCTCAGGTGAGCTAA 1279
|||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||
Sbjct 1275 AAGCTGATGACATGGATGAGCTTGCTCGGTTAGCTGATACCTACGGGTCAGGTGAGCTAA 1334
Query 1280 GACTCACGGTAGAGCAAAACATCATCATCCCAAATGTAGAAACCTCGAAAACCGAAGCTT 1339
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 GACTCACAGTAGAGCAAAACATCATCATCCCAAATGTAGAAACCTCGAAAACCGAAGCTT 1394
Query 1340 TGCTTCAAGAGCCATTTCTCAAGAACCGTTTCTCCCCTGAACCATCTATCCTGATGAAAG 1399
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1395 TGCTTCAAGAGCCGTTTCTCAAGAACCGTTTCTCCCCTGAACCATCTATCCTAATGAAAG 1454
Query 1400 GCTTAGTTGCTTGTACTGGTAACCAGTTTTGCGGGCAAGCAATAATCGAGACCAAACTCA 1459
|||||||||||||||| |||| |||||| ||||| ||||| ||||||||||| || || |
Sbjct 1455 GCTTAGTTGCTTGTACCGGTAGCCAGTTCTGCGGACAAGCGATAATCGAGACTAAGCTAA 1514
Query 1460 GAGCTTTAAAAGTTACGGAAGAAGTGGAGAGACTTGTATCTGTGCCAAGACCGATAAGAA 1519
||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1515 GAGCTTTAAAAGTGACAGAAGAAGTAGAGAGACTTGTATCTGTGCCAAGACCGATAAGGA 1574
Query 1520 TGCATTGGACAGGATGTCCCAACACTTGCGGACAAGTCCAAGTCGCAGATATCGGGTTCA 1579
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1575 TGCATTGGACAGGATGTCCCAACACTTGCGGACAAGTCCAAGTAGCAGATATCGGATTCA 1634
Query 1580 TGGGATGCTTAACACGTGGCGAG-AACGGAAAGCCTGTCGAGGGTGCTGACGTGTACGTC 1638
|||||||||||||||| |||||| || |||||||| ||||||||||||||||||||||||
Sbjct 1635 TGGGATGCTTAACACGAGGCGAGGAA-GGAAAGCCAGTCGAGGGTGCTGACGTGTACGTC 1693
Query 1639 GGTGGACGAATAGGAAGTGACTCGCATATCGGAGAGATCTACAAGAAAGGTGTTCGTGTG 1698
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1694 GGGGGACGAATAGGAAGTGACTCGCATATCGGAGAGATCTATAAGAAAGGTGTTCGTGTC 1753
Query 1699 ACGGATTTGGTTCCATTGGTGGCTGAGATTCTAATCAAAGAATTTGGTGCTGTGCCTaga 1758
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1754 ACGGAGTTGGTTCCATTGGTGGCTGAGATTCTGATCAAAGAATTTGGTGCTGTGCCTAGA 1813
Query 1759 gagagagaagagaATGAAGATTGATTCAAA-GCTTTTGGATT 1799
|| ||||||||||||||||||||||||||| ||| |||||||
Sbjct 1814 GAAAGAGAAGAGAATGAAGATTGATTCAAAAGCTATTGGATT 1855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89156167920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5