BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931292
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36675.1 | Symbols: | glycine-rich protein | chr1:13867568-... 329 2e-89
> AT1G36675.1 | Symbols: | glycine-rich protein | chr1:13867568-13869490
FORWARD LENGTH=807
Length=807
Score = 329 bits (178), Expect = 2e-89
Identities = 255/292 (87%), Gaps = 6/292 (2%)
Strand=Plus/Plus
Query 168 ATGCCGTCAGCTGTTCCAAACTATCGTCCATATCATGGATCGATGATGTCGTATTCATCT 227
||| |||||||| || ||||| | |||||||||||||||||||| ||||| || |||
Sbjct 1 ATGTCGTCAGCTATTACAAACCACCGTCCATATCATGGATCGATTATGTCACCGTCGTCT 60
Query 228 CAAGCACCCTGTTATTCTTCTGCTCCAATGGGTAATGAAACTAATAC-AAGTGTTGGAGC 286
|||||||||| |||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct 61 CAAGCACCCTCTTATTCTTCTACTCCAATGGGTAATGAAACTAATACGAA-TGTTGGAGC 119
Query 287 AATTGAAATTCCAG-AATTTTCTACACAAATGGCTCTTGGTGGTATGAGTAGTGTTCATG 345
|| |||| |||| | ||||||||||||||||||||||||||| ||||||| ||||||| |
Sbjct 120 AACTGAA-TTCCCGGAATTTTCTACACAAATGGCTCTTGGTGTTATGAGTGGTGTTCACG 178
Query 346 AAGCCATTCCAAATGAAGAGGATTCAACTCCTGCTCGTACGAGAAGCTCCAAATGGACCA 405
|| | ||||||||||||||||||| |||| | || | |||||||||||||||||||||
Sbjct 179 AAACTATTCCAAATGAAGAGGATTTAACTTGTAATCATTCGAGAAGCTCCAAATGGACCA 238
Query 406 CTGAACAAAATTTGGTGCTACTGAGTGGGTGGATAAAAATATGGAACAGATA 457
|||| ||||||||||||||||||||| ||||||| ||| |||| |||| |||
Sbjct 239 CTGATCAAAATTTGGTGCTACTGAGTAGGTGGATTAAA-TATG-AACAAATA 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47923376238
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5