BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931304
Length=221
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28320.1 | Symbols: DEG15 | protease-related | chr1:9920507-... 315 1e-85
> AT1G28320.1 | Symbols: DEG15 | protease-related | chr1:9920507-9924488
REVERSE LENGTH=2437
Length=2437
Score = 315 bits (170), Expect = 1e-85
Identities = 204/220 (93%), Gaps = 3/220 (1%)
Strand=Plus/Plus
Query 1 CTCTCATCCATTTGGGCTTTGATGCCATCACTGCTATCACCAAAGACTGAGCAGCCTCTA 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 2074 CTCTCATCCATTTGGGCTTTGATGCCATCA---CTATCACCAAAGACTGAGCAGTCTCTA 2130
Query 61 TCCAATCTGCCTAAGTTACTCAAAGATGGTAATAACAAACAAAAGAAAGAATCTCAGTTT 120
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 2131 CCCAATCTGCCTAAGTTACTCAAAGATGGTAATAACAAACAAACGAAAGGATCTCAGTTT 2190
Query 121 GCCAAGTTTATTGCAGATACCAAAGACAAGTTTGTAAACCCGACCAAGCTTTCCCGAGAT 180
|||||||| |||||||| ||| |||||| ||||||||| ||||||||||||||||| |||
Sbjct 2191 GCCAAGTTCATTGCAGAGACCCAAGACATGTTTGTAAAGCCGACCAAGCTTTCCCGTGAT 2250
Query 181 GTGATCTCTAGCAAGTTATGAGAAAATTGGCTTCTTTGCA 220
|||||| |||||||||||||| || |||||||||||||||
Sbjct 2251 GTGATCCCTAGCAAGTTATGACAAGATTGGCTTCTTTGCA 2290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9902746553
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5