BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931308
Length=1519
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15695.1 | Symbols: | Protein of unknown function DUF829, t... 2364 0.0
> AT2G15695.1 | Symbols: | Protein of unknown function DUF829,
transmembrane 53 | chr2:6833880-6836434 REVERSE LENGTH=1675
Length=1675
Score = 2364 bits (1280), Expect = 0.0
Identities = 1435/1510 (95%), Gaps = 9/1510 (1%)
Strand=Plus/Plus
Query 17 GAAAATGATCGGCGGTGGTAGGGTTTATTGGGGGAAAAAGTCT-GATAAAGAGATTGAAG 75
|||||||||||||||||||||||||||||||||||| |||| | ||||||||||| ||||
Sbjct 95 GAAAATGATCGGCGGTGGTAGGGTTTATTGGGGGAAGAAGT-TAGATAAAGAGATGGAAG 153
Query 76 ATGCTGCGGCGGTTGACGGTGGTGGATCTAACGGTGTTGTTGTGATCTTTGTTTGGAGTT 135
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 154 ATGCGGCGGTTGTTGACGGTGGTGGATCTAACGGTGTTGTTGTGATCTTTGTTTGGAGCT 213
Query 136 CGATTAACGAGAATCAGCTTATGAATTTCGTTGATCTTTATTCTTCTCTTGGTTGGAATT 195
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 CGATTAACGAGAACCAGCTTATGAATTTCGTTGATCTTTATTCTTCTCTTGGTTGGAATT 273
Query 196 CTCTTGTTTGTCGCGCTGATTTCCTCACTGCGTTTTATCCTGAAATGGCTCTTTCTTTAG 255
|||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 274 CTCTTGTTTGCCGCGCTGATTTTCTCACCGCGGTTTATCCTGAAATGGCTCTTTCTTTAG 333
Query 256 CATTCCACCTTCTTTCTGAACTTGTTGAGGAGTTAAAGACTAGACCATGTCCTGTTATCT 315
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 334 CATTCCATCTTCTTTCTGAACTTGTTGAGGAGTTAAAGAGTAGACCATGTCCTGTTATCT 393
Query 316 TTCTAGCTTTCTCTGGTGCTCCTAAAGCTTGTATGTATAAAGTAT-TACAGGTGATCATG 374
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 394 TTCTAGCTTTCTCTGGTGCTCCTAAAGCTTGTATGTATAAAGT-TCTACAGGTGATCATG 452
Query 375 GGTGATTGTGAAGCTCAAATTCATCCAGATGATAGCCAGTTGGTTAGAAACTGTCTTTCT 434
| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 453 GATGATTGTGAAGCTCAAATTCATCCGGATGATAGCCAGTTGGTTAGAACCTGTCTTTCT 512
Query 435 GGACATGTCTATGACTCTGGCCCGTTGGATTTTACGAGTGATTTGAATGTTAAATTTGCA 494
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 513 GGACATGTCTATGACTCTGGCCCGTTGGATTTTACGAGTGATTTGAATGTGAAATTCGCA 572
Query 495 CTACATCCCACCATACGACGAATGTCTGGGCCTTCTAGACTAGTATCTTGGGTGGCTAAA 554
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 573 CTACATCCCACCATACGACGAATGTCTGGTCCTTCTAGACTAGTATCTTGGGTGGCTAAA 632
Query 555 GGGATTTCTTCGGGGCTGGACGGTTTATATCTTACAAGGTTTGAATCCCAACGCAGTGAG 614
||||||||||| ||||| || ||||||||||||||||| |||||||||||||| ||||||
Sbjct 633 GGGATTTCTTCCGGGCTTGATGGTTTATATCTTACAAGATTTGAATCCCAACGTAGTGAG 692
Query 615 TACTGGCAGGCCCTCTACTCATCAGTTGAAATTGGGGCTCCATATCTCATCTTGTGCTCG 674
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 693 TACTGGCAGGCCCTCTACTCATCGGTTGAAATTGGGGCTCCATATCTCATTTTGTGCTCC 752
Query 675 GAGAATGACGAACTTGCTCCTTTACAAGTAATTTCAAGCTTCACTCATCAATTGCAGGAA 734
|||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct 753 GAGAATGATGAACTTGCTCCTCTACAAGTAATTTCAAGCTTTACCCATCAATTGCAGGAA 812
Query 735 CTGGGAGGAGAAGTTAAGGTTGTCAAGTGGAAAAATTCTCCTCATGCAGGACACTACGCA 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 CTGGGAGGAGAAGTTAAGGTTGTCAAGTGGAAAAATTCTCCTCATGCAGGACACTACGCA 872
Query 795 CATAACCCTATACAGTACCGGGCTGTTATCTCCAACTTTCTAGAGAAAGCCATGTCAGTT 854
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 873 CATAACCCTATACAATACCGGGCTGTTATCTCCAACTTTCTGGAGAAAGCCATATCAGTT 932
Query 855 CACTTACAGAAAATCCGGCAGCTCGGAGAAAGAGCTCACACACATGATGAGATCTCTGAG 914
|||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 933 CACTTACATAAAATCCGGCAGCTCGGAGAAAGAGCTCACACGCATGATGAAATCTCTGAG 992
Query 915 TTAATATGCGACCTTCAGAAAGTCGCTGTGAACTCTAACCAAAGCCTAAGAAGAGTAGCC 974
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 993 TTAATATGCGACCTTCAGAAAGTTGCTGTGAACTCTAACCAAAGCCTAAGAAGAGTAGCC 1052
Query 975 ACTGGGCCAAGTGACCACTTTTTCTTACCCAGCTCAGCGCCGTATCAAAGTAACAGCAGC 1034
||||||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||| |
Sbjct 1053 ACTGGGCCATGTGACCACTTTTTCTTACCTAGCTCAGCACCGTATCAAAGCAACAGCAAC 1112
Query 1035 AGCAACGACCCATCATCTTCACAAGAAGAACAGAGAGAAAGATCTTCCTTCCGCCCACTC 1094
| || ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1113 AACAGCGATCCATCATCTTCACAAGAAGAACAGAGAGAAAGATCGTCCTTCCGCCCACTC 1172
Query 1095 CAACCAACTAGTATAAACGCTCACAGCGTTCTCGGGCAATTCCTATTCGACTCATGTGTT 1154
|||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1173 CAACCAACGAGCATAAACGCTCACAGCGTACTCGGGCAATTCCTATTCGACTCATGTGTT 1232
Query 1155 CCAAAGAACATCGAAGGATGGGATATCAGATTCGCGGGTTCTCTCAACGGTCAACCGTAT 1214
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 1233 CCAAAGAACATCGAAGGATGGGATATCAGATTTGCGGGTTGTCTCAACGGTCAACCATAT 1292
Query 1215 GCCACGTCCTCCTCCCGTAAGAATTCAAATCTTGGTTTTAAGAAACGCGTTTTCCGTTCA 1274
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1293 GCCACGTCCTCCTCCCGTAAGAACTCAAATCTTGGTTTTAAGAAACGCTTTTTCCGTTCA 1352
Query 1275 AGACTATGAATGAAATCGCTGAAACTGAGCCAGGTGC-GCGTAATGTGAACCATATGGGG 1333
||||||||||||||||||| |||||||||| |||| | | || |||||||||||||||||
Sbjct 1353 AGACTATGAATGAAATCGCAGAAACTGAGCAAGGTACTGGGTGATGTGAACCATATGGGG 1412
Query 1334 AAGTAGTAGAGAGATGTTTAGAAAAGAAGAGGATGTATAGGATGCGGAAGATGTAAATAG 1393
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1413 AAGTAGTAGAGAGATGTTTAGAAAGGAAGAGGATGTATAGGATGCGGAAGATGTATATAG 1472
Query 1394 AGTGACGATTACTAC----TAACATACATGAGTGATCTTCGAATGTTGTGTGTACAAGTC 1449
||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1473 AGTGACGATTACTACAACCTAACATACATGAGGGATCTTCAAATGTTGTGTGTACAAGTC 1532
Query 1450 TCAAAAATAAGTCTGTATAGATAGACATATCTGTTACTTGTGTACACGAAAATGTGTTAA 1509
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1533 TCAAAAATAAGTCTGTATAGATAGACATATCTGTTACTTGTCTACACGAAAATGTGTTAA 1592
Query 1510 TAAAACACTG 1519
||| ||||||
Sbjct 1593 TAACACACTG 1602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74949413685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5