BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931310
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15740.1 | Symbols: | C2H2-like zinc finger protein | chr2:... 1256 0.0
AT2G18490.1 | Symbols: | C2H2-like zinc finger protein | chr2:... 532 2e-150
AT5G42640.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 448 7e-125
> AT2G15740.1 | Symbols: | C2H2-like zinc finger protein | chr2:6856746-6857735
REVERSE LENGTH=990
Length=990
Score = 1256 bits (680), Expect = 0.0
Identities = 894/996 (90%), Gaps = 19/996 (2%)
Strand=Plus/Plus
Query 21 ATGTCTTCTATTCCAAATAAGTTCAATCTTCATTGTGATGATACTAACAATCGTGGTTTT 80
||||||||||| |||||||||||||||| ||| ||||||| | ||||||||||||||||
Sbjct 1 ATGTCTTCTATGCCAAATAAGTTCAATCCTCACTGTGATG--A-TAACAATCGTGGTTTT 57
Query 81 TCCTCCAAACAAATGAATCAAAATTC-CAAAATAGTTCAATCGATGTTCATTACCTCGGA 139
||||||| ||||||||||||||||| | |||| ||||| |||| ||||||||| |||||
Sbjct 58 TCCTCCATCCAAATGAATCAAAATTCTC-AAATGGTTCATTCGAGGTTCATTACTTCGGA 116
Query 140 TCACACAAACCATGGTGATTTGTTTTCCTCATCTCCTTCTTTAACtttttttCAAAATTC 199
||||||||||||||||||| ||||||| |||||||||||||| ||| |||||| |||||
Sbjct 117 TCACACAAACCATGGTGATCTGTTTTCATCATCTCCTTCTTTTTCTTGTTTTCATAATTC 176
Query 200 ACATGTTTCTTCATCTTCATTTGGATTTAAAAATTCACATGTGAAAAATCAAATGATGAG 259
||||| |||||||||||||||||||| |||||||||||||| ||||||| |||||||
Sbjct 177 ACATGCCTCTTCATCTTCATTTGGATTCCAAAATTCACATGTGGAAAATCATATGATGAA 236
Query 260 GAGAAACATAATTTCTGGTGACAATTATTTTCCTATAAAAAACAATCCTCATTTTAC-CA 318
||||||||||||||||| ||||||||||||| |||| | |||||||||||||||||| |
Sbjct 237 GAGAAACATAATTTCTGATGACAATTATTTTTCTATCACAAACAATCCTCATTTTACTC- 295
Query 319 GAGTTTCTTTCACACAAAGCATTACAAATAGGTATACCGCTATTGTTCCTACTAATACAC 378
|||||||||||||||||| ||||||||| | | ||| || |||||||||||||||||||
Sbjct 296 GAGTTTCTTTCACACAAACCATTACAAACAAATTTACAGCCATTGTTCCTACTAATACAC 355
Query 379 TTGACATTGTACAATATGATATTCAACGTGTCAAACGTGCCATGTATTCCAAAACTAATA 438
||||| ||||||||||||| |||||||||||||||||||||| || ||||||| ||||
Sbjct 356 TTGACGCTGTACAATATGATGCTCAACGTGTCAAACGTGCCATGAATCCCAAAACCAATA 415
Query 439 TTTGGAATCCTAAATTTTTTCCTCCAAATATTTTTGATAAACAGTGTGAACTTTTGAATC 498
|||||||||||| ||||| ||||||||||| |||||||||||| || ||| |||||||||
Sbjct 416 TTTGGAATCCTATATTTTCTCCTCCAAATACTTTTGATAAACAATGCGAATTTTTGAATC 475
Query 499 CTAAACCTCTTAATGTCATTGTTCCGCGTCAAGATTCTGCATATTCTCAACATTTAGACA 558
|||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||
Sbjct 476 CTAAACCTCTTAATGTCATTTTTCCGAGTCAAAATTCTGCATATCCTCAACATTTAGACA 535
Query 559 TGTTTTCATTGTCATCAAAACACAACTACA--ACCAACGTGTTCCT-CAATATGGTTC-T 614
||||||| ||||||||||| ||||| | || | ||||||||| || ||| |||| || |
Sbjct 536 TGTTTTCCTTGTCATCAAAGCACAA-T-CATGATCAACGTGTT-CTCCAAGATGG-TCGT 591
Query 615 TTTTTGAAGAAAATCTTGAAACCAACCA-AGTTTTTTGGAA-CAAGTACTGATTATATTG 672
| | |||||||||||||||||||||||| | |||||| ||| ||| ||||||||| ||||
Sbjct 592 TCTATGAAGAAAATCTTGAAACCAACCATA-TTTTTT-GAAGCAACTACTGATTACATTG 649
Query 673 AGTCTGAAGAAAATGAGAAAAGTAACGATGATCAGTATGATGGTCGGACACATAGTCTAC 732
||||| ||||||| |||||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 650 AGTCTCAAGAAAACGAGAAAAGTAACAATGATCACAATGATGGTAGGACACATAGTCTAC 709
Query 733 CATATGAAAAATATGGTCCATATACATGTCCCAAGTGCAATGGCGTATTCGATACTTCTC 792
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 710 CATATGAAAAATATGGTCCATATACATGTCCCAAGTGCAATGGCGTCTTTAATACTTCTC 769
Query 793 AAAAATTTGCTGCACATATGTCATCTCACTACAAGAATGAAACGAGCGAAGAAAGAGAAC 852
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 770 AAAAATTTGCTGCACATATGTCATCTCACTACAAGAATGAAACAAGCGAAGAAAGAGAAC 829
Query 853 ATAGACTTCGTGCAAAGAACAAAAGAAAATATTGTAAACTAAATCACGAAATTCATGGTG 912
| ||| |||||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct 830 AGAGAATTCGTGCAAAGAACAAAAGAAAATTTTGTAAACTAAATCGTGAAATTAATGGTG 889
Query 913 AGTCTCAAAAGTCTAAACAAGAGGATGTAGTCAACAACGGTGaaaaaaaTGACGATAAAG 972
|| |||||||| | |||||||||||||| | ||||||| ||||||||| ||||||||||
Sbjct 890 AGCCTCAAAAGACCAAACAAGAGGATGTGGCCAACAACAGTGAAAAAAGTGACGATAAAA 949
Query 973 CTTTCCAACATCTTGTGATCGTAAAAGAAGAGCTTG 1008
||||||||||||||||| ||||||||||||||||||
Sbjct 950 CTTTCCAACATCTTGTGGTCGTAAAAGAAGAGCTTG 985
> AT2G18490.1 | Symbols: | C2H2-like zinc finger protein | chr2:8020668-8021423
FORWARD LENGTH=756
Length=756
Score = 532 bits (288), Expect = 2e-150
Identities = 575/713 (81%), Gaps = 22/713 (3%)
Strand=Plus/Plus
Query 283 ATTATTTTCCTATAAAAAACAATCCTCATTTTACCAGAGTTTCTTTCACACAAAGCATTA 342
||||||| ||||| ||| | ||||||||| |||| |||||||||||||| |||| |||||
Sbjct 35 ATTATTTGCCTATTAAAGATAATCCTCATCTTACTAGAGTTTCTTTCACTCAAACCATTA 94
Query 343 CAAATAGGTATACCGCTATTGTTCCTACTAATACACTTGACATTGTACAATATGATATTC 402
| |||||||||| ||||||||||||| ||| ||||||| ||| ||||||||||||
Sbjct 95 CTAATAGGTATAGTTCTATTGTTCCTACCAATTCACTTGATGCTGTTCAATATGATATTG 154
Query 403 AACGTGTCAAACGTGCCATGTATTCCAAAACTAATATTTGGAATCCTAAATTTTT-TCCT 461
||| |||||||||||||||| |||| ||| | ||||||||||||||| ||||| ||||
Sbjct 155 AACTTGTCAAACGTGCCATGGATTCTAAACCCAATATTTGGAATCCT-GTTTTTTATCCT 213
Query 462 CCAAATATTT-TTGATAAACAGTGTGA-ACTTTTGAATCCTAAACCTCTTAATGTCATTG 519
|||||| ||| ||| |||||| || || | |||| || ||| | ||||| |||||||||
Sbjct 214 CCAAAT-TTTCTTGGTAAACAATGCGAGA-TTTTAAACCCTGAGCCTCTAAATGTCATTT 271
Query 520 TTCCGCGTCAAGATTCTGCATATTC-TCAACATTTAGACATGTTTTCATTGTCATCAAAA 578
|||| | ||| |||||| | | || |||| ||||| |||||||||| |||||||||||
Sbjct 272 TTCCTCACCAAAATTCTGGAGA-TCGTCAATATTTAAACATGTTTTCCTTGTCATCAAAG 330
Query 579 CACAACTACAACCAACGTGTTCCTCAAT-ATGGTTC-TTTTTTGA-AGAAAATCTTGAAA 635
|| ||| | | ||| |||| || || | || | | || || | |||||| |||
Sbjct 331 CATAACCATGATCAAAATGTT-TTCCATGAAGG-CCGATCTTCGACA-AAAATCCCCAAA 387
Query 636 CCAACCAAGTTTTTTGGAACAAGTACTGATTATATTGAGTCTGAAGAAAATGAGAAAAGT 695
||||||| || ||| || || |||||| ||||| || | ||||||||| |||||||||
Sbjct 388 CCAACCATGTCCATTGAAAAAACTACTGAATATATAGATTGTGAAGAAAACGAGAAAAGT 447
Query 696 AACGATGATCAGTATGATGGTCGGACACATAGTCTACCATATGAA-AAATATGGTCCATA 754
|||||| ||| ||||||||||| | ||||||| |||||||| || ||||||||||||||
Sbjct 448 GACGATGCTCAATATGATGGTCGAATACATAGTTTACCATAT-AAGAAATATGGTCCATA 506
Query 755 TACATGTCCCAAGTGCAATGGCGTATTCGATACTTCTCAAAAATTTGCTGCACATATGTC 814
||||||||| |||||||| | |||| ||||||||||||||||||||||||||||||||
Sbjct 507 TACATGTCCTAAGTGCAACAGTATATTTGATACTTCTCAAAAATTTGCTGCACATATGTC 566
Query 815 ATCTCACTACAAGAATGAAACGAGCGAAGAAAGAGAACATAGACTTCGTGCAAAGAAC-A 873
|||||||||||||| |||||||| ||||||||| || ||| ||||||||| ||| |
Sbjct 567 ATCTCACTACAAGAGTGAAACGAATAAAGAAAGAGCTCAAAGATTTCGTGCAA-GAAATA 625
Query 874 AAAGAAAATATTGTAAACTAAATCACGAAATTCATGGTGAGTCTCAAAAG-TCTAAACAA 932
||||||||||| ||||| | |||| ||| || |||| |||||||||||| | |||||||
Sbjct 626 AAAGAAAATATCGTAAATTGAATCTTGAAGTTTATGGGGAGTCTCAAAAGAT-TAAACAA 684
Query 933 GAGGATGTAGTCAACAACGGTGaaaaaaaTGACGATAAAGCT-TTCCAACATC 984
|| |||| ||| | || | || || | |||||| ||| || ||| ||||||
Sbjct 685 GAAGATGGGGTCCATAATGATGGAAGGAGTGACGACAAACCTATTC-AACATC 736
> AT5G42640.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr5:17088695-17089597 FORWARD LENGTH=903
Length=903
Score = 448 bits (242), Expect = 7e-125
Identities = 697/905 (77%), Gaps = 78/905 (9%)
Strand=Plus/Plus
Query 21 ATGTCTTCTATTCCAAATAAGTTCAATCTTCATTGTGATGAT---ACTAACAATCGTGGT 77
|||||||| || ||||||| ||||||| || || ||| |||| || ||| ||||| |
Sbjct 1 ATGTCTTCCATCCCAAATAGGTTCAATATTTATGGTGGTGATACCACAAACCATCGT-GA 59
Query 78 TTTTCCTCCAAAC-AAATGAATCAAAATTC-CAAAATAGTTCAATCGATGTTCATTACCT 135
| | ||| | | |||||||||| || || | ||| |||| ||| ||||||||||| |
Sbjct 60 ATCGCTTCCCATCGAAATGAATCACAACTCTC-GAATGGTTCGATCCATGTTCATTACAT 118
Query 136 CGGATCACACAAACCATGGTGATTTGTTTTCCTCAT-CTCCTTCTTTAACtttttttCAA 194
| |||| || || ||| | ||||||||||| || | |||||||||| ||| || ||||
Sbjct 119 CTGATCGCATGAATCATAGAGATTTGTTTTCTTC-TCCTCCTTCTTTCTCTTCTTATCAA 177
Query 195 AATTCACATGTTTCTTCATCTTCAT-TTGGATTTAAAAATTCACATGTGAAAAATCAAAT 253
||||||||| | ||||||||||| | |||| ||||| ||||||||| ||| |||| ||
Sbjct 178 AATTCACATATCTCTTCATCTTC-TGTTGGGTTTAATAATTCACATATGACTTATCATAT 236
Query 254 GATGAGGAGAAA-CAT-A----ATTTCTGGTGAC-AATTATTTTC-CTA-TAAAAAACAA 304
| ||| ||||| || | |||| ||| | |||| |||| ||| |||| | | |
Sbjct 237 GCTGAAAAGAAATTATGATTCTGTTTCCCGTG-CTGATTA-TTTCTCTACTAAAGATC-A 293
Query 305 TCCTCATTTTAC-CAGAGTTTCTTTCACACAAAGCATTACAAATAGGTATACCGCTATTG 363
| |||||||||| || ||| |||||||| |||| ||| ||||||| |||||| ||||||
Sbjct 294 TTCTCATTTTACTCA-AGTATCTTTCACTCAAACCATCACAAATAAGTATACTACTATTG 352
Query 364 TTCCTACTAATACACTTGACATTGTACAATATGATATTCAACGTGTCAAACGTGCCAT-G 422
||||| | |||| | |||||| ||| || ||||||||| ||||||||||||||||| |
Sbjct 353 TTCCTTCCAATATATTTGACACTGTTCACTATGATATTGGTCGTGTCAAACGTGCCATAG 412
Query 423 TATTCCAAAACTAATATTTGGAATCCTAAATTTTTTCCTCCAAATATTTTTGATAAACAG 482
||| | | ||||||||||||||||||| | || |||||| | ||| ||| ||
Sbjct 413 -ATT-TTAGA--AATATTTGGAATCCTAAATCTCATCTTCCAAAAAAATTTAATAGGCAA 468
Query 483 TGTGA-ACTTTTGAATCCTAAACCTCTTAATGTCAT-TGTTCCGCGTCAAGATTCTGCAT 540
|| || | |||||||||||| ||||||||| || | | |||||| || ||||| || |
Sbjct 469 TGCGAGA-TTTTGAATCCTACCCCTCTTAATATCGTCT-TTCCGCACCAGGATTCAGC-T 525
Query 541 -ATTC-TCAACATTTAGACA-TGTTTTCATTGTCATCAAAACACAACTACAACCAACGTG 597
| || |||||||||||||| | ||||| | |||||| | | | | |||||| | ||
Sbjct 526 GA-TCGTCAACATTTAGACATTATTTTC-TCGTCATC---A-A-AGC-ACAACC-ATGT- 575
Query 598 TTCCTCAATATGGTTC-TTTTTTGAAGAAAATCTT--GAAACCAACCAAGT-TTTTTGGA 653
|| | ||| |||| || | ||||||||||| || | |||||||||| | | ||| ||
Sbjct 576 TTTC-CAAGATGG-TCGATCCTTGAAGAAAAT-TTCCG-AACCAACCAA-TCTGTTT-GA 629
Query 654 ACAAGTACTGATT-ATATTGAGTCTGAAGAAAATGAGAAAAGTAACGATG---ATCAGTA 709
| || | || ||| || ||| ||| ||||| ||||||||| | ||||| |||| ||
Sbjct 630 A-AAAT-CTAATTCTTA-TGATTCTCAAGAAGATGAGAAAA-T--CGATGCTTATCAATA 683
Query 710 TGATGGTCGGACACATAGTCTACCATATGA-AAAATATGGTCCATATACATGTCCCAAGT 768
||||||||| |||||||||||||| ||| | ||||| ||||||||||||||||||| ||
Sbjct 684 TGATGGTCGTACACATAGTCTACCGTAT-ACGAAATACGGTCCATATACATGTCCCAGGT 742
Query 769 GCAATGGCGTATTCGATACTTCTCAAAAATTTGCTGCACATATGTCATCTCACTACAAGA 828
| || || || || ||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 743 GTAACGGTGTGTTTGATACTTCTCAAAAATTTGCTGCACATATGTTATCTCACTACAATA 802
Query 829 ATGAAACG-AGCGAAGAAAGAGAACATAGACTTCGTGCAAAGAACA-AAAGAAA--ATAT 884
|||| ||| | | |||||||||| || ||| ||||||||| ||| | ||| ||| ||||
Sbjct 803 ATGAGACGGA-CAAAGAAAGAGACCAAAGATTTCGTGCAA-GAA-ATAAA-AAACGATAT 858
Query 885 TGTAA 889
||||
Sbjct 859 CGTAA 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50636020176
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5