BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931324

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G15830.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   375    7e-104
  AT2G15840.1 | Symbols:  | pseudogene, hypothetical protein | ch...   217    5e-56 


> AT2G15830.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant 
structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT4G33960.1); 
Has 18 Blast hits to 18 proteins in 4 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:6894118-6894551 
FORWARD LENGTH=434
Length=434

 Score =  375 bits (203),  Expect = 7e-104
 Identities = 230/243 (95%), Gaps = 2/243 (1%)
 Strand=Plus/Plus

Query  1    GAGAAAGAG--AGAAAGAGACGATGGTGATAAAGAGAATAGAGCTATGCATAGAGATTAC  58
            |||||||||  ||||||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct  36   GAGAAAGAGAAAGAAAGAGAGGATGGTGATAAAGAAAATCGAGCTATGCATAGAGATTAC  95

Query  59   GAAGATAGCAATGGAGTTCTTGGTGGTGGTGGCTGACGCCGTGACAATCTTCTTAAGGCA  118
            ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  96   GAAGATAACAATGGAGTTCTTGGTGGTGGTGGCTGACGCCGTCACAATCTTCTTAAGGCA  155

Query  119  ATCTTCTCCACCTCCTCCGGCTCTCCTCCGCCATGGCCTCTACTCTTACTCTGCCTCCCT  178
            |||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| 
Sbjct  156  ATCTTCTCCACCTCCTCCGGCTCTACTCCGCCATGGTCTCTACTCATACTCTGCCTCCCC  215

Query  179  TAATCGTCCTTCTTCCCATTACGTCATCGGCTTTCTTCCCTAAGTTTGTAATCGTTTCGT  238
            ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  216  TAATCCTCCTTCTTCCCATTACATCATCGGCTTTCTTCCCTAAGTTTGTAATCGTTTCGT  275

Query  239  TTT  241
            |||
Sbjct  276  TTT  278


> AT2G15840.1 | Symbols:  | pseudogene, hypothetical protein | 
chr2:6897746-6900002 REVERSE LENGTH=2257
Length=2257

 Score =  217 bits (117),  Expect = 5e-56
 Identities = 156/175 (89%), Gaps = 2/175 (1%)
 Strand=Plus/Minus

Query  8    AGAGAAAG-AGACGATGGTGATAAAGAGAATAGAGCTATGCATAGAGATTACGAAGATAG  66
            |||||||| | | |||| |||||||||||||| ||||||||||||| |||| || || ||
Sbjct  246  AGAGAAAGAAAAAGATGTTGATAAAGAGAATAAAGCTATGCATAGAAATTATGATGAAAG  187

Query  67   CAATGGAGTTCTTGGTGGTGGTGGCTGACGCCGTGACAATCTTCTTAAGGCAATCTTCTC  126
            ||| ||||||||| |||||  ||||| ||||  | |||||||||||||||||||||||||
Sbjct  186  CAAAGGAGTTCTTTGTGGTTCTGGCTAACGCAATCACAATCTTCTTAAGGCAATCTTCTC  127

Query  127  CACCTCCTCCGGCTCTCCTCCGCCATGGCCTCTACTCTTACTCTGCCT-CCCTTA  180
            ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct  126  CACCTCCTCCGGCTCTCCTCCGCCATGGCCTCTACTCTTACTCCGCCTTCCCTTA  72



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10908101533


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5