BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931328
Length=1075
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superf... 584 5e-166
AT5G02980.1 | Symbols: | Galactose oxidase/kelch repeat superf... 104 2e-21
> AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:16916072-16917184 FORWARD LENGTH=1113
Length=1113
Score = 584 bits (316), Expect = 5e-166
Identities = 804/1028 (78%), Gaps = 80/1028 (8%)
Strand=Plus/Plus
Query 33 CCTCCGACATCGTTTTCTTCGTTACCGGAAGACATCATTCTCAGTTGCTTGGCTCGTGTC 92
|||||||| |||||||||||||||||||| |||||| |||||| || ||||||||||||
Sbjct 40 CCTCCGACGTCGTTTTCTTCGTTACCGGACGACATCGTTCTCAACTGTTTGGCTCGTGTC 99
Query 93 TCAAAATTCTATCGTCCGACTCTATCCTTAGTCTCCAAGTATTTCCGATCTCTCGTAG-C 151
|| | |||| || ||| ||||||||| |||||| |||| ||||||||| ||| ||| |
Sbjct 100 TCCAGATTCCATTATCCAACTCTATCCCTAGTCTGCAAGGGTTTCCGATCACTCCTAGAC 159
Query 152 TTCTCC-TGATCTTGAGGCCACACGTTCCCGCAACGGGATAACAGAAGA-TTAT-CTCTG 208
|| || ||| || | || ||||| || ||| ||| | ||| | ||| || | ||||
Sbjct 160 -TC-CCGTGAGCTCCACGCAACACGATCTTGCATCGGAAAAACCG-AGAGTT-TCCTCTA 215
Query 209 CGTCTGCTTA-AAC-G--T-GG----G--GTCTA-A--G-CCT---CGCTGGTTCACACT 250
|||||||||| | | | | || | || | | | ||| || ||||| | | |
Sbjct 216 CGTCTGCTTAGACCTGCATAGGAATTGCTATCCAGACTGTCCTCCACGATGGTTTATAGT 275
Query 251 TGCACC-ATTCCCACAACAACAGAAACTCAAACCAATCCCTCCTTATTATAAACATCCCA 309
| | || ||| || | |||||||||| ||||| |||||| | | | || | |
Sbjct 276 TTCCCCGATT---ACCA-AACAGAAACTGAAACCTATCCCT--TCGGT-T--ACTTGTC- 325
Query 310 AATCCTCCACCGTTGTTTCAATCGGTTCAGAGATTTACATAATCGGAGGCTCCCTTCAT- 368
||||||| |||||||| |||||||||||| ||||||||||||||||||||| | || ||
Sbjct 326 AATCCTCAACCGTTGTATCAATCGGTTCAAAGATTTACATAATCGGAGGCTTCGTTGATG 385
Query 369 CA-AAAGAAAGGCAACAGAGTGTTGGTTCTTGATTGTCGATCTCATCTATGGCGTAGACT 427
| | || | ||| ||| || | || || ||||||| ||||||| ||||||||||||
Sbjct 386 GACATAG-TA-GCAGGAGATTGATAGTACTCGATTGTCCATCTCATGGATGGCGTAGACT 443
Query 428 ACCAAACATGCGTCTAGCTAGA-GAAACTCCAGCCGCTGATGTAATCGATGGTAAGATCT 486
|| | |||||| || || || |||| |||| |||||||||||| | | ||||||||
Sbjct 444 CCCCGAGATGCGTGTACCTCGACAAAAC-GCAGCAGCTGATGTAATCAACGATAAGATCT 502
Query 487 ACGTGAATGGAGGCTCTACG-TCGTACAAAATCGAGAATTGGGGAGAGGTTTATGATCTA 545
|||||| ||||||||||| | || |||| |||||| ||||||||||||||||||| | |
Sbjct 503 ACGTGATTGGAGGCTCTA-GTTCCAACAATATCGAGGATTGGGGAGAGGTTTATGACCCA 561
Query 546 AAGACCCAAACTTGGGAGCCATTATTGTTTACAACACTTGATCTCACCACTCATAA-GAG 604
||||||||||||||||||||| ||||| |||||||| ||||| || ||| || |||
Sbjct 562 AAGACCCAAACTTGGGAGCCAGTATTGCCCACAACACTAGATCTTACTGTTCA-AATGAG 620
Query 605 TGTGGTTCCAGGTAAATTGGTAATGGGTGGAAAAGTTTAT-TCTATGAATGATGATTTGA 663
|||||||||||||| ||||||||| |||| ||||||||| | ||||||| || ||||
Sbjct 621 TGTGGTTCCAGGTAGCTTGGTAATGAGTGGGAAAGTTTATGAC-ATGAATG--GA-TTGA 676
Query 664 AGATTAGCTTGGAGAAGAATGTTTGCTTGGTAGAGATAGAGAACATGATGTGCCAAATAT 723
|| ||| ||| |||||||| |||||||||| ||||||||||||||||||||||||| |
Sbjct 677 AGCTTAACTTTCAGAAGAATATTTGCTTGGTGGAGATAGAGAACATGATGTGCCAAACAA 736
Query 724 CGATTT-CGAAGGGGATGTTAGTTTGGTAT-AATCCAGAGG-AGAATTTG-GGGTGGAGT 779
| ||| ||||||| |||||||||||| | || ||||||| || | | | |||||| ||
Sbjct 737 AGGTTTGTGAAGGGG-TGTTAGTTTGGTGTGAA-CCAGAGGAAG-A-TCGTGGGTGGTGT 792
Query 780 AGGGTTGAGGGACTTGAAGGAGTACCTC-GTGA-TCCATA-TTTTCCTGGTTATCTAACT 836
|||||| |||||||||||| | || | | | ||| | || |||||||||||| ||
Sbjct 793 CCGGTTGATGGACTTGAAGGACTTCC-CAAT-AGGCCA-ACTTCTCCTGGTTATCTTACC 849
Query 837 TCGGTGGCA-AGTTACGACCGAGGAAGGAGAGTAACAGTTTGGTGGAAGT-TGATAGTGA 894
||||||||| | || |||||||||||| |||||||||||||||||| ||| | | |||
Sbjct 850 TCGGTGGCACA-TTCCGACCGAGGAAGAAGAGTAACAGTTTGGTGGGAGTCGGCT-GTG- 906
Query 895 GT-CGTTGT-T-GG-CCTGATTGGA-T--GGAAAGTAAAACAGAGATTTGGTGTGCAGAG 947
| | | || | || || | |||| | |||| ||||||||||||||||||||||||||
Sbjct 907 TTACATCGTCTAGGTCCCAAATGGACTAAGGAATGTAAAACAGAGATTTGGTGTGCAGAG 966
Query 948 ATTTCGTTTGAGAGACGAGAT-TTAGGAAAGCTTTGGGGTTTTGTTGAATGGTCTAAGAA 1006
||||||||||||||||| | | || |||||| |||| || ||||||||||||||||||||
Sbjct 967 ATTTCGTTTGAGAGACGCGGTGTT-GGAAAGGTTTGTGGATTTGTTGAATGGTCTAAGAA 1025
Query 1007 TGTGTTTA 1014
||| ||||
Sbjct 1026 TGTCTTTA 1033
> AT5G02980.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:697993-699000 FORWARD LENGTH=1008
Length=1008
Score = 104 bits (56), Expect = 2e-21
Identities = 78/88 (89%), Gaps = 4/88 (5%)
Strand=Plus/Plus
Query 927 ACAGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGAGATTTAGGAA-AGCTTTGGGG 985
|||||||||||||||||||||||||||||||||||||| | |||| || ||||||||||
Sbjct 859 ACAGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGTTTAA-AAGAGCTTTGGGG 917
Query 986 TTTTGTTGAATGGTCTA-AGAATGTGTT 1012
||||| |||||||||| | || |||||
Sbjct 918 ATTTGTAGAATGGTCTAGAAAA-GTGTT 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52660371705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5