BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931330

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G44210.2 | Symbols:  | Protein of Unknown Function (DUF239) ...   124    5e-28


> AT2G44210.2 | Symbols:  | Protein of Unknown Function (DUF239) 
| chr2:18280623-18282876 FORWARD LENGTH=1809
Length=1809

 Score =  124 bits (67),  Expect = 5e-28
 Identities = 86/95 (91%), Gaps = 2/95 (2%)
 Strand=Plus/Plus

Query  35   GACAAGGGTTAGTTTCTTCTTAGCTCTGGTAATGACGGTGGCGATTCTTTCCCCTGCTGT  94
            ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||
Sbjct  192  GACAAGGGTTAGTTTCTTCTTAGCTCTGGTAATGACGGTGGTGATTCTTGCTCCTTCTGT  251

Query  95   CGTCTCCGGCAGAAA-TGCTTTTTCCGATCTTAAA  128
            |||||| || ||||| ||  |||||||||||||||
Sbjct  252  CGTCTCTGG-AGAAAATGGGTTTTCCGATCTTAAA  285



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18297460636


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5