BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931342
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06030.1 | Symbols: | Plant self-incompatibility protein S1... 571 2e-162
AT5G06040.1 | Symbols: | self-incompatibility protein-related ... 324 6e-88
AT5G36904.1 | Symbols: | pseudogene of protein related to self... 204 8e-52
> AT5G06030.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr5:1813919-1814371 FORWARD LENGTH=453
Length=453
Score = 571 bits (309), Expect = 2e-162
Identities = 412/460 (90%), Gaps = 14/460 (3%)
Strand=Plus/Plus
Query 21 ATGATAAACTCATCCAGAAA-AAATCTCAATTCTTAT-TTCTGCTCAATTTTCACTATGT 78
|||||||||||||||| ||| |||||| |||||||| || ||||||||||||| |||||
Sbjct 1 ATGATAAACTCATCCA-AAATCAATCTCTATTCTTATGTT-TGCTCAATTTTCATTATGT 58
Query 79 CCATAGTTGTGATATCTTTGATATGTTCAGAAGCTTTTCCAATTCAACAAGCTAAAGAAC 138
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 59 CCATAGTTGTGATATCTTTGATATGTTCAGAAGCTCTTCAAATTCAACAAGCTAAAGAAC 118
Query 139 CACCTCGAGGTCATCTTACGAGAGTCACGATTCAAAATGATAACGACTATCTTCTTGGAA 198
|| |||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||
Sbjct 119 CATTTCGAGGTCATCTTACGAGAGTCACGATTCAAAATTATAATGACTATCTTCTTGCAA 178
Query 199 TCCATTGTAAATCAAGAGATGATGATTTAGGATTTCACATTCTTGCTAAAGGTGAA-TTA 257
| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct 179 TTCATTGTAAATCAAGAGATGATGATTTAGGCTTTCACATACTTGCTAAAGGTGAACTT- 237
Query 258 TTTGGTTGGAAGTTTCATGTCAATTTTCGTTATTCAACGCTCTATTTTTGTGGTTTTAGC 317
|||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||
Sbjct 238 TTTGGTTGGAAGTTTCATGTTAATTTTCGTTATTCGACGCTCTGTTTTTGTGGTTTTAGC 297
Query 318 CAAGGAAAAATAAAGAAAGGCGTGTTCGA-AATTTACAG-AGCGAA-TAGAGATTTTTAT 374
||| || ||||||| ||||| ||||| | |||||| | ||| | |||||||||||||
Sbjct 298 CAAAGACAAATAAATAAAGGTGTGTTT-ATAATTTAT-GTAGC-ATCTAGAGATTTTTAT 354
Query 375 AGATGTGCAAATTGTACATGGAAAGCTGA-AAAGGATGGTGTTCATGGATATACCGATAT 433
||||||||||| ||||||||||||||||| |||| ||||| ||||||||||| |||||
Sbjct 355 AGATGTGCAAACTGTACATGGAAAGCTGAGAAAG-ATGGTTTTCATGGATATGGTGATAT 413
Query 434 TCCTAAGAAAAGTTATTTATTTTATAGTTGGTTAAAGTAA 473
||||| | | ||||||||||||||| ||||||||| |||
Sbjct 414 TCCTACTAGAGGTTATTTATTTTATAATTGGTTAAACTAA 453
> AT5G06040.1 | Symbols: | self-incompatibility protein-related
| chr5:1815128-1816037 FORWARD LENGTH=336
Length=336
Score = 324 bits (175), Expect = 6e-88
Identities = 211/229 (92%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 21 ATGATAAACTCATCCAGAAAAAATCTCAATTCTTATTTCTGCTCAATTTTCACTATGTCC 80
|||||||||||||||| || ||||||||||||||| ||||||||||||||| |||||||
Sbjct 1 ATGATAAACTCATCCATAATCAATCTCAATTCTTATGTCTGCTCAATTTTCATTATGTCC 60
Query 81 ATAGTTGTGATATCTTTGATATGTTCAGAAGCTTTTCCAATTCAACAAGCTAAAGAACCA 140
||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct 61 ATAGTTGTGATATCTTTGATATGTTCATTAGCTCTTCAAATTCAACAAGCTAAAGAACCA 120
Query 141 CCTCGAGGTCATCTTACGAGAGTCACGATTCAAAATGATAACGACTATCTTCTTGGAATC 200
| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CTTCGAAATCATCTTACGAGAGTCACGATTCAAAATGATAACGATTATCTTCTTGGAATC 180
Query 201 CATTGTAAATCAAGAGATGATGATTTAGGATTTCACATTCTTGCTAAAG 249
|| |||||| || |||||||||||||||| |||||||||||| ||||||
Sbjct 181 CAATGTAAACCAGGAGATGATGATTTAGGCTTTCACATTCTTACTAAAG 229
> AT5G36904.1 | Symbols: | pseudogene of protein related to self-incompatibility
| chr5:14556141-14556625 FORWARD LENGTH=485
Length=485
Score = 204 bits (110), Expect = 8e-52
Identities = 137/150 (91%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 21 ATGATAAACTCATCCAGAAAAAATCTCAATTCTTATTTCTGCTCAATTTTCACTATGTCC 80
|||||||||||||| ||| ||||||||| |||||||| ||||||||||||| | |||||
Sbjct 1 ATGATAAACTCATCGAGAGTAAATCTCAACTCTTATTTTTGCTCAATTTTCATTGTGTCC 60
Query 81 ATAGTTGTGATATCTTTGATATGTTCAGAAGCTTTTCCAATTCAACAAGCTAAAGAACCA 140
||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct 61 ATAGTTGTGATATCTTTGATATGTTCAGAAGCTCTTCAAATTCAACAAACTAAAGAACCA 120
Query 141 CCTCGAGGTCATCTTACGAGAGTCACGATT 170
| ||||||||||||||||||||| || |||
Sbjct 121 CTTCGAGGTCATCTTACGAGAGT-ACCATT 149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23610049090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5