BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931346
Length=11422
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35075.1 | Symbols: | unknown protein; Has 30201 Blast hits... 178 1e-42
AT2G15930.1 | Symbols: | unknown protein; Has 1 Blast hits to ... 158 1e-36
> AT2G35075.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:14786682-14789023
FORWARD LENGTH=1548
Length=1548
Score = 178 bits (96), Expect = 1e-42
Identities = 122/135 (90%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 5854 GGGAAGTGTGGCGTTCATTTGATAGTATCGCTGCGTCTTTGGCTTCTCATCAAAAGAAGT 5913
|||| |||||||||| ||| |||||||| |||| ||||||||||||||| ||||||||||
Sbjct 752 GGGATGTGTGGCGTTTATTGGATAGTATTGCTGTGTCTTTGGCTTCTCAACAAAAGAAGT 811
Query 5914 CATCAATATCTTTAAAGGAAGTTGCTCCGAGTATGTCTTTCTTATCATCCTGTAACATTC 5973
||||| ||||||||||||||||| |||| ||| |||||| |||||||||||||||||||
Sbjct 812 CATCAGTATCTTTAAAGGAAGTTTCTCCTAGTTTGTCTTGGTTATCATCCTGTAACATTC 871
Query 5974 CAATGCCTGGTTTGG 5988
||||||||||| |||
Sbjct 872 CAATGCCTGGTCTGG 886
> AT2G15930.1 | Symbols: | unknown protein; Has 1 Blast hits to
1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:6941590-6941978 REVERSE LENGTH=177
Length=177
Score = 158 bits (85), Expect = 1e-36
Identities = 103/112 (92%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 1 TCTCCGAAGCTTCAATCGACTTGATGATGCAAAGCTTCCACCATCAGCAGCAGCAGCTGA 60
|||| |||||||||||| |||| ||||||||||||||||||||| |||||||||||||||
Sbjct 150 TCTCTGAAGCTTCAATCTACTTAATGATGCAAAGCTTCCACCATTAGCAGCAGCAGCTGA 91
Query 61 TTTCGCTGCTCTCGTCGGCTTTACCAACTGACGCCTCCGCTTCTCCTCTACC 112
||| | || ||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 90 TTTTGTTGTTCTCGTCAGCTTTACCAACTGACGCCTCCGCTTCTCTTCTACC 39
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 571219287354
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5