BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931350

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20270.2 | Symbols:  | Thioredoxin superfamily protein | chr...   507    7e-143


> AT2G20270.2 | Symbols:  | Thioredoxin superfamily protein | chr2:8737786-8739660 
REVERSE LENGTH=879
Length=879

 Score =  507 bits (274),  Expect = 7e-143
 Identities = 338/367 (92%), Gaps = 12/367 (3%)
 Strand=Plus/Plus

Query  13   AAATCGCCATGGTAGCCGCAACAGTTAACCTCGCAAACATGACATGGACGTCGCTAAATT  72
            ||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||
Sbjct  36   AAATCGCCATGGTAGCCGCAACAGTAAACCTCGCGAACATGACATGGACGTCGTTAAATT  95

Query  73   CAAATCCAGCACTCTCTTTCTCCATGTTAAGCGGAATCAGAAGCTTGGGTATGTTACCTT  132
            ||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct  96   CAAATCCAGCAATCTCTTTCTCCATGTTAAGCGGAATCAGAAACTTGGGCATGTTACCTT  155

Query  133  TGAGGAGATGTCTAAAGCCGACAGTAATCGGAATCGCGTCGTGGCCACCACAACGTTGTT  192
            | ||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||
Sbjct  156  TCAGGAGATGTCTAAAGCCGACAGTTATCGGAATCGCGTCGTGGCCACCACTCCGTTGTT  215

Query  193  CTTCTGTTAGGGCCATGTCTTCAT--TCG-----G-----ATCGACATTGGAGGAGACTA  240
            ||||||||| ||| ||||||||||  |||     |     ||||||||||||||||||| 
Sbjct  216  CTTCTGTTAAGGCTATGTCTTCATCATCGTCTTCGTCTGGATCGACATTGGAGGAGACTG  275

Query  241  TTAAAACGACTGTGGCAGAGAACCCTGTCGTTGTTTACTCCAAAACCTATTGCTCATACT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct  276  TTAAAACGACTGTGGCAGAGAACCCTGTCGTTGTTTACTCCAAAACCTGGTGCTCATACT  335

Query  301  CGTCTGAAGTGAAGTCCTTGTTCAAGAGTCTTCAAGTTGAGCCACTGGTTGTTGAATTGG  360
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  336  CGTCTCAAGTGAAGTCCTTGTTCAAGAGTCTTCAAGTTGAGCCACTGGTTGTTGAATTGG  395

Query  361  ATGAACT  367
            || ||||
Sbjct  396  ATCAACT  402


 Score =  316 bits (171),  Expect = 1e-85
 Identities = 193/204 (95%), Gaps = 0/204 (0%)
 Strand=Plus/Plus

Query  406  GTTCAGAGGGGCCGCAGCTGCAGAATGTGTTGGAGAAAATTACTGGACAATACACTGTTC  465
            ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  486  GTTCAGAAGGGTCGCAGCTGCAGAATGTGTTGGAGAAAATTACTGGACAATACACTGTTC  545

Query  466  CTAATGTTTTCATCGGAGGCAAGCACATTGGTGGCTGCTCAGATACATTGCAGCTGTACA  525
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  546  CCAATGTTTTCATCGGAGGCAAGCACATTGGTGGCTGCTCAGATACATTGCAGCTGCACA  605

Query  526  ATAAAGGAGAGCTGGAGGCAATGTTAGCTGAAGCCAATGGAAAAACCGGTCAAACCTAGA  585
            |||||||||||||||| ||||| |||||||||||||||||||||| |||||| |||||||
Sbjct  606  ATAAAGGAGAGCTGGAAGCAATTTTAGCTGAAGCCAATGGAAAAAACGGTCAGACCTAGA  665

Query  586  GATTTTTACTGATGAAACTGGTTG  609
            ||||| ||  ||||||||||||||
Sbjct  666  GATTTCTAGAGATGAAACTGGTTG  689



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29336741848


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5