BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931362
Length=512
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20160.1 | Symbols: MEO, ASK17 | E3 ubiquitin ligase SCF com... 545 1e-154
AT2G03190.1 | Symbols: ASK16, SK16 | SKP1-like 16 | chr2:964214... 276 2e-73
> AT2G20160.1 | Symbols: MEO, ASK17 | E3 ubiquitin ligase SCF complex
subunit SKP1/ASK1 family protein | chr2:8699672-8700124
REVERSE LENGTH=453
Length=453
Score = 545 bits (295), Expect = 1e-154
Identities = 410/462 (89%), Gaps = 22/462 (5%)
Strand=Plus/Plus
Query 22 ATGTCTTCGAACAAGATTGTGTTGACTAGCTCCGATGATGAATCTTTCGAGGTTGACGAA 81
||||||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 1 ATGTCTTCGAAGAAGATTGTGTTGACTAGCTCCGATGATGAATGTTTTGAGATTGACGAA 60
Query 82 GCGGTGGCTCGTAA-ATCGCAGATCATAGCGCACATGATCGATGAAGATTGCGCCGATAA 140
|||||||||||||| || |||||| ||||||||||||||||||| ||||||||||||||
Sbjct 61 GCGGTGGCTCGTAAGAT-GCAGATGGTAGCGCACATGATCGATGACGATTGCGCCGATAA 119
Query 141 AGCAATCCTGCTTCAAAACGTCACTGGAAAGATCCTCGCTATCATTATCGAGTATTGCAA 200
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGCAATCCGGCTTCAAAACGTCACTGGAAAGATCCTCGCTATCATTATCGAGTATTGCAA 179
Query 201 GAAACACGTTGATGATGTTGATAGTGAAGCAAAGAATGAGCTCGTGATGACTTGGGACGC 260
||||||||||||||||||||| || ||| ||||||| |||||| ||||||||||
Sbjct 180 GAAACACGTTGATGATGTTGA-AGC----CAA-GAATGAGTTCGTGA---CTTGGGACGC 230
Query 261 AGAGTTCATGAAAAACATTGATATGGAAACAGTCTTCAAACTCCTTAACGCTGCTGACTA 320
||||||| ||||||||||||||||||| ||| |||||||||||||| |||||||||||||
Sbjct 231 AGAGTTCGTGAAAAACATTGATATGGATACACTCTTCAAACTCCTTGACGCTGCTGACTA 290
Query 321 TCTCAACGTCAAAGGTCTTCTTGA-TCTCACTAGCAACA--CCATTGCAGATTACA-T-C 375
||||| ||||| |||||| | || ||||| | || || ||||||||||||||| | |
Sbjct 291 TCTCATCGTCATAGGTCT-CAAGAATCTCATT-GCC-CAGGCCATTGCAGATTACACTGC 347
Query 376 AAAGATAAGAAGGTAGAGGAAATACGAGAAATCTTTAACATCGAGAACGATTATACACCT 435
| ||||||| |||| | || || |||||| |||||||||||||||||||||| ||||||
Sbjct 348 A--GATAAGACGGTAAATGAGATTCGAGAACTCTTTAACATCGAGAACGATTACACACCT 405
Query 436 GAGGAAGAAGAAGAGCTTCGCAAGCAGAAAGCATGGGCATTT 477
|||||||||||||||||||||||| |||| | |||||| |||
Sbjct 406 GAGGAAGAAGAAGAGCTTCGCAAGAAGAACGAATGGGC-TTT 446
> AT2G03190.1 | Symbols: ASK16, SK16 | SKP1-like 16 | chr2:964214-964901
FORWARD LENGTH=688
Length=688
Score = 276 bits (149), Expect = 2e-73
Identities = 195/217 (90%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 10 AACAAAAGAAA-TATGTCTTCGAACAAGATTGTGTTGACTAGCTCCGATGATGAATCTTT 68
||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 6 AACAAAACAAACAATGTCTTCGAACAAGATTGTGTTGACTAGCTCGGATGATGAATCGTT 65
Query 69 CGAGGTTGACGAAGCGGTGGCTCGTAAATCGCAGATCATAGCGCACATGATCGATGAAGA 128
||||||||| ||||||||||||||||||| | || ||||||| |||||||||||||| ||
Sbjct 66 CGAGGTTGAGGAAGCGGTGGCTCGTAAATTGAAGGTCATAGCACACATGATCGATGACGA 125
Query 129 TTGCGCCGATAAAGCAATCCTGCTTCAAAACGTCACTGGAAAGATCCTCGCTATCATTAT 188
||||||||||||||||||| |||| |||||||||| ||||| ||||||||| | ||||
Sbjct 126 CTGCGCCGATAAAGCAATCCCGCTTGAAAACGTCACCGGAAATATCCTCGCTTTGGTTAT 185
Query 189 CGAGTATTGCAAGAAACACGT--T-GATGATGTTGAT 222
||||||||||||||||||||| | ||||||||||||
Sbjct 186 CGAGTATTGCAAGAAACACGTACTTGATGATGTTGAT 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24464029589
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5