BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg931362 Length=512 Score E Sequences producing significant alignments: (Bits) Value AT2G20160.1 | Symbols: MEO, ASK17 | E3 ubiquitin ligase SCF com... 545 1e-154 AT2G03190.1 | Symbols: ASK16, SK16 | SKP1-like 16 | chr2:964214... 276 2e-73 > AT2G20160.1 | Symbols: MEO, ASK17 | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein | chr2:8699672-8700124 REVERSE LENGTH=453 Length=453 Score = 545 bits (295), Expect = 1e-154 Identities = 410/462 (89%), Gaps = 22/462 (5%) Strand=Plus/Plus Query 22 ATGTCTTCGAACAAGATTGTGTTGACTAGCTCCGATGATGAATCTTTCGAGGTTGACGAA 81 ||||||||||| ||||||||||||||||||||||||||||||| ||| ||| |||||||| Sbjct 1 ATGTCTTCGAAGAAGATTGTGTTGACTAGCTCCGATGATGAATGTTTTGAGATTGACGAA 60 Query 82 GCGGTGGCTCGTAA-ATCGCAGATCATAGCGCACATGATCGATGAAGATTGCGCCGATAA 140 |||||||||||||| || |||||| ||||||||||||||||||| |||||||||||||| Sbjct 61 GCGGTGGCTCGTAAGAT-GCAGATGGTAGCGCACATGATCGATGACGATTGCGCCGATAA 119 Query 141 AGCAATCCTGCTTCAAAACGTCACTGGAAAGATCCTCGCTATCATTATCGAGTATTGCAA 200 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 AGCAATCCGGCTTCAAAACGTCACTGGAAAGATCCTCGCTATCATTATCGAGTATTGCAA 179 Query 201 GAAACACGTTGATGATGTTGATAGTGAAGCAAAGAATGAGCTCGTGATGACTTGGGACGC 260 ||||||||||||||||||||| || ||| ||||||| |||||| |||||||||| Sbjct 180 GAAACACGTTGATGATGTTGA-AGC----CAA-GAATGAGTTCGTGA---CTTGGGACGC 230 Query 261 AGAGTTCATGAAAAACATTGATATGGAAACAGTCTTCAAACTCCTTAACGCTGCTGACTA 320 ||||||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||||| Sbjct 231 AGAGTTCGTGAAAAACATTGATATGGATACACTCTTCAAACTCCTTGACGCTGCTGACTA 290 Query 321 TCTCAACGTCAAAGGTCTTCTTGA-TCTCACTAGCAACA--CCATTGCAGATTACA-T-C 375 ||||| ||||| |||||| | || ||||| | || || ||||||||||||||| | | Sbjct 291 TCTCATCGTCATAGGTCT-CAAGAATCTCATT-GCC-CAGGCCATTGCAGATTACACTGC 347 Query 376 AAAGATAAGAAGGTAGAGGAAATACGAGAAATCTTTAACATCGAGAACGATTATACACCT 435 | ||||||| |||| | || || |||||| |||||||||||||||||||||| |||||| Sbjct 348 A--GATAAGACGGTAAATGAGATTCGAGAACTCTTTAACATCGAGAACGATTACACACCT 405 Query 436 GAGGAAGAAGAAGAGCTTCGCAAGCAGAAAGCATGGGCATTT 477 |||||||||||||||||||||||| |||| | |||||| ||| Sbjct 406 GAGGAAGAAGAAGAGCTTCGCAAGAAGAACGAATGGGC-TTT 446 > AT2G03190.1 | Symbols: ASK16, SK16 | SKP1-like 16 | chr2:964214-964901 FORWARD LENGTH=688 Length=688 Score = 276 bits (149), Expect = 2e-73 Identities = 195/217 (90%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 10 AACAAAAGAAA-TATGTCTTCGAACAAGATTGTGTTGACTAGCTCCGATGATGAATCTTT 68 ||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 6 AACAAAACAAACAATGTCTTCGAACAAGATTGTGTTGACTAGCTCGGATGATGAATCGTT 65 Query 69 CGAGGTTGACGAAGCGGTGGCTCGTAAATCGCAGATCATAGCGCACATGATCGATGAAGA 128 ||||||||| ||||||||||||||||||| | || ||||||| |||||||||||||| || Sbjct 66 CGAGGTTGAGGAAGCGGTGGCTCGTAAATTGAAGGTCATAGCACACATGATCGATGACGA 125 Query 129 TTGCGCCGATAAAGCAATCCTGCTTCAAAACGTCACTGGAAAGATCCTCGCTATCATTAT 188 ||||||||||||||||||| |||| |||||||||| ||||| ||||||||| | |||| Sbjct 126 CTGCGCCGATAAAGCAATCCCGCTTGAAAACGTCACCGGAAATATCCTCGCTTTGGTTAT 185 Query 189 CGAGTATTGCAAGAAACACGT--T-GATGATGTTGAT 222 ||||||||||||||||||||| | |||||||||||| Sbjct 186 CGAGTATTGCAAGAAACACGTACTTGATGATGTTGAT 222 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24464029589 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5