BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931375
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20060.1 | Symbols: | Ribosomal protein L4/L1 family | chr2... 1463 0.0
> AT2G20060.1 | Symbols: | Ribosomal protein L4/L1 family | chr2:8659043-8661489
FORWARD LENGTH=1282
Length=1282
Score = 1463 bits (792), Expect = 0.0
Identities = 877/917 (96%), Gaps = 9/917 (1%)
Strand=Plus/Plus
Query 17 TCAGAGATAATGGCTGCTTCAATCTCAACAAGGATTTTTCGCACTTTTGGA------T-- 68
|||||||| |||||||||||||| |||| |||||||||||||||||||||| |
Sbjct 109 TCAGAGATTATGGCTGCTTCAATTTCAAGAAGGATTTTTCGCACTTTTGGATCCTTTTCA 168
Query 69 -CTCTAGGACGTTGCTCTTCACCAAATTTGTCGGCGAATACATCTGGAAATGGTTTATCT 127
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 169 GCTCTAGGACGTTCCTCTTCACCAAATTTGTCTGCGAATACATCTGGAAATGGTTTAGCT 228
Query 128 TCTCTAACTAGTGATCTCAAGTATGGAATGGCTTTACTTTCCAACCGAAAGCTCTCCACT 187
||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 TCTCTTACTAATGATCTAAAGTATGGAATGGCTTTACTTTCCAACCGAAAGCTCTCCACT 288
Query 188 TCTATTTTGACTCCTGATGATACATTTCCTTCTGATTTACTTACGAAAAAGACCGTGCTT 247
||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct 289 TCTATTTTGACTCCTGATGATTCATTTCCTTCTGATTTACTTACCAAAAAGACTGTGCTT 348
Query 248 ACACCAGACCGAACCATAGGACAATATCAAGACTTGGTCATTCCGGTGACAAATTTTCAG 307
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 349 ACACCAGACCGAACCATAGGACAATATCAAGACTTGGTCATTCCAGTGACTAATTTTCAG 408
Query 308 AACGAGGAGAAGGGTTTCATGGTTTTAGCAGGGGATGTCTTTGATGTTCCAATAAGGAAA 367
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 409 AACGAGGAAAAGGGTTTCATGGTTTTAGCAGGTGATGTCTTTGATGTTCCAATAAGGAAA 468
Query 368 GATATCATTCACAATGTCGTGCGATGGCAGCTTGCAAAACGCCAGCAGGGAACTCATTCG 427
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 469 GATATCATTCACAATGTCGTGCGATGGCAGCTTGCGAAACGCCAGCAGGGAACTCATTCG 528
Query 428 ACCAAAACATTGAGTGAAGTTAGTGGAACTGGTAGAAAGCCATGGAATCAGAAGGGTACA 487
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 ACCAAAACGTTAAGTGAGGTTAGTGGAACTGGTAGAAAGCCATGGAATCAGAAGGGTACA 588
Query 488 GGTCGAGCTAGACATGGTACACTGCGTGGTCCGCAGTTCCGAGGTGGTTGTGTAATGCAT 547
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 589 GGTCGAGCTAGACATGGTACACTACGTGGTCCGCAGTTCCGAGGTGGTTGTGTAATGCAT 648
Query 548 GGACCCAAACCGAGAAGCCATGCGATAAAGATGAATAAGCAGGTTCGACGGCTTGGACTG 607
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 649 GGACCCAAACCAAGAAGCCATGCCATAAAAATGAATAAGCAGGTTCGACGGCTTGGACTG 708
Query 608 AAAATAGCATTGACAGCTCGAGCCGCAGAAGGAAAACTCCTCGTGTTCGATGATTTGGCA 667
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 709 AAAATAGCATTGACAGCTCGAGCCGCAGAAGGAAAACTCCTCGTGTTTGATGATTTGGGA 768
Query 668 TTGCCTACGCATAAAACAAAGAACATTGTGAATTATTACAATCAAATGGAGAACACAAAG 727
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 769 TTGCCTACGCATAAAACAAAGAACATTGTGAACTATTACAACCAAATGGAGAACACAAAG 828
Query 728 AAAGTCCTTGTTGTAGAAGGTGGTCCTATTGATGAAAAGCTGAAGCTAGCCACCCAAAAT 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 AAAGTCCTTGTTGTAGAAGGTGGTCCTATTGATGAAAAGCTGAAGCTAGCCACCCAAAAT 888
Query 788 CTACACTATGTCAACGTAATTCCATCAATAGGGCTAAATGTTTACAGCATTCTGCTACAC 847
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTACACTATGTCAACATAATTCCATCAATAGGGCTAAATGTTTACAGCATTCTGCTACAC 948
Query 848 GATACGCTTGTGATGTCCCGTGATGCTGTGAATAAGATCGTTGAGCGTATGAACACTCCT 907
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 949 GATACGCTTCTGATGTCCCGTGATGCTGTGAATAAGATCGTTGAGCGTATGCACACTCCT 1008
Query 908 ATTAACCGTTGAAGAGA 924
|||||||||||||||||
Sbjct 1009 ATTAACCGTTGAAGAGA 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45964244505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5