BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931379

Length=289
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20000.1 | Symbols: HBT, CDC27b | CDC27  family protein | ch...  82.4    2e-15


> AT2G20000.1 | Symbols: HBT, CDC27b | CDC27  family protein | 
chr2:8632078-8637300 REVERSE LENGTH=2881
Length=2881

 Score = 82.4 bits (44),  Expect = 2e-15
 Identities = 94/115 (82%), Gaps = 16/115 (14%)
 Strand=Plus/Plus

Query  89   GGTTAATTTGCAGCTATTAGCCACCAGCTACCT------T---CAAGCCCACAGTGTATA  139
            |||||||||||||||||||||||||||||||||      |   |||||  |||||| |||
Sbjct  505  GGTTAATTTGCAGCTATTAGCCACCAGCTACCTGCAGAATAATCAAGCTTACAGTGCATA  564

Query  140  TCATCTGCTAAAGGGTGCGTGGCACAAATGGCTCAGTCCCCG-TACTTGTTCGCA  193
            |||||||||||||||  |     ||||||||||||||||| | ||||||||||||
Sbjct  565  TCATCTGCTAAAGGGAAC-----ACAAATGGCTCAGTCCC-GATACTTGTTCGCA  613



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13320953485


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5