BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931380
Length=2899
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20010.2 | Symbols: | Protein of unknown function (DUF810) ... 4667 0.0
> AT2G20010.2 | Symbols: | Protein of unknown function (DUF810)
| chr2:8637747-8641556 REVERSE LENGTH=3461
Length=3461
Score = 4667 bits (2527), Expect = 0.0
Identities = 2772/2892 (96%), Gaps = 10/2892 (0%)
Strand=Plus/Plus
Query 4 GTGAATTCGAAGTGGAAATGGAATCGTTACCATCTCCATTTGGCGATCCAGCTCCTAATT 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GTGAATTCGAAGTGGAAATGGAATCGTTACCATCTCCATTTGGCGATCCAGCTCCTAATT 415
Query 64 TATCTGATTCGGAGCTCCGAGAATCCGCTTACGAGATCTTAGTCGCTGCTTGCCGTAGCA 123
|||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 416 TATCCAATTCGGAGCTCCGAGAAACTGCTTACGAGATCTTAGTCGCTGCTTGCCGTAGCA 475
Query 124 CTGGAAGTCGTCCGCTGACTTACATCCCTCAATCGCCCAAATCTGATCGGAGCAACGGTG 183
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 476 CTGGAAGTCGTCCGCTGACTTACATCCCTCAATCGCCGAAATCTGATCGGAGCAACGGTC 535
Query 184 TGACGACGACGGT-GTTAGCTCCGTCACCGTCACTTCATAGATCTCTGACTTCTACAGCT 242
|||||||| | || |||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct 536 TGACGACGGC-GTCGTTATCTCCGTCTCCGTCGCTTCATAGATCTCTGACTTCTACAGCT 594
Query 243 GCGAGTAAGGTGAAGAAAGCTTTAGGTATGAAGAAACGAATCGGCGGA-GGAGAAGGA-G 300
||||||||||||||||| || ||||| ||||||||||||||||| || ||||| ||| |
Sbjct 595 GCGAGTAAGGTGAAGAAGGCGTTAGGGATGAAGAAACGAATCGG-AGACGGAGACGGAGG 653
Query 301 ACGGC-GGAGAATCTTCGGGTCAACCGGATCGGAGCAAGAAATCAGTCACGGTTGGTGAG 359
| || |||||||| ||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct 654 A--GCGGGAGAATCGTCGAGTCAACCGGATCGGAGCAAGAAATCCGTCACGGTGGGTGAG 711
Query 360 TTAGTTCGGGTACAAATGCGAATTTCGGAGCAGATCGATTCAAGGATTCGAAGAGCTCTT 419
|| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 712 TTGGTTCGGGTACAAATGCGAATCTCGGAGCAGATTGATTCAAGGATTCGTAGAGCTCTT 771
Query 420 CTCAGGATCGCTTCTGGTCAGCTTGGGAGGCGTGTGGAGATGATGGTGCTACCGCTTGAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 772 CTCAGGATCGCTTCTGGTCAGCTTGGGAGGCGTGTGGAGATGATGGTGCTACCTCTTGAG 831
Query 480 CTTCTGCAACAGCTTAAAGCTTCAGATTTTCCAGACCAAGAAGAGTATGAATCATGGCAG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CTTCTGCAACAGCTTAAAGCTTCAGATTTTCCAGACCAAGAAGAGTATGAATCATGGCAG 891
Query 540 AGAAGAAACTTGAAGCTTCTTGAAGCCGGTTTGATTTTATATCCTTGTGTGCCGTTAAGT 599
||||| |||||||||||||||||||| |||||||| |||||||||||||||||| |||||
Sbjct 892 AGAAGGAACTTGAAGCTTCTTGAAGCTGGTTTGATATTATATCCTTGTGTGCCGCTAAGT 951
Query 600 AAATCTGATAAATCTGTTCAACAGCTTAAGCAGATTATTCGGTCGGGTATCGAGAGGCCG 659
||||| |||||||||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 952 AAATCAGATAAATCTGTTCAACAGCTTAAGCAGATTATCCGGTCCGGTCTCGAGAGGCCG 1011
Query 660 TTAGATACCGGGAAGATCACGGGGGAGACTCAGAATCTTAGGAGTTTAGTAATGTCTCTT 719
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1012 TTAGATACCGGGAAGATTACGGGGGAGACGCAGAATCTTAGGAGTTTAGTAATGTCTCTT 1071
Query 720 GCTAGTCGGCAGAACAACAATGGGATTGGTTCTGAGACTTGTCATTGGGCTGATGGGTTT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 GCTAGTCGGCAGAACAACAATGGGATTGGTTCTGAGACTTGTCATTGGGCTGATGGGTTT 1131
Query 780 CCGCTGAATCTTAGAATCTATCAGATGCTTTTAGAGTCTTGTTTTGATGTGAACGATGAG 839
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 CCACTGAATCTTAGAATCTATCAGATGCTTTTAGAGTCTTGTTTTGATGTGAACGATGAG 1191
Query 840 TTGTTGATTGTTGAAGAAGTAGATGAAGTTTTAGAGCTTATAAAGAAAACATGGCCTGTC 899
||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1192 TTGCTGATTGTTGAAGAGGTAGATGAAGTTTTGGAGCTTATAAAGAAAACATGGCCTGTC 1251
Query 900 TTGGGTATGAATCAGCTGATTCACAATGTTTGCTTTCTTTGGGTGTTGTTTAATCGGTAT 959
||||| || |||||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1252 TTGGGGATAAATCAGATGATTCACAATGTTTGCTTTCTCTGGGTGTTGGTTAATCGGTAT 1311
Query 960 GTTTCAACCGGACAAGTGGAGAATGACTTGCTTGTAGCTGCTCATAACTTGATACTCGAA 1019
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1312 GTTTCAACCGGGCAAGTGGAGAATGACTTGCTTGTGGCTGCTCATAACTTGATACTCGAA 1371
Query 1020 ATTGAGAATGACGCAACGGAGACAAATGATCCTGAGTATTCCAAGATCTCGAGTTCTGTT 1079
|||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1372 ATTGAGAACGACGCAATGGAGACAAATGATCCTGAGTATTCCAAGATCTTGAGTTCTGTT 1431
Query 1080 TTGAGTTTGGTGATGGATTGGGCTGAGAAGAGACTTCTTGCTTACCATGATACTTTCAAC 1139
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1432 TTGAGTTTGGTGATGGATTGGGGTGAGAAGAGACTTCTTGCTTACCATGATACTTTCAAC 1491
Query 1140 ATCGATAACGTTGAGACACTGGAAACTATGGTTTCTTTGGGGATTTTGGTAGCTAAGGTA 1199
|| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1492 ATTGATAACGTTGAGACGCTGGAAACTACGGTTTCTTTGGGGATTTTGGTAGCTAAGGTA 1551
Query 1200 CTAGGCGAAGATATTTCTAGCGAGTATAGAAGGaaaaaaaaGCATGTCGATTCAGGGCGT 1259
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1552 CTAGGTGAAGATATTTCTAGCGAATATAGAAGGAAAAAGAAGCATGTCGATTCAGGGCGT 1611
Query 1260 GATCGAGTCGATACCTATATCAGGTCTTCGTTGCGTATGGCTTTTTC-ACAGACAAAGAG 1318
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1612 GATCGAGTTGATACCTATATCAGGTCTTCGTTGCGTATGGC-TTTTCAACAGACAAAGAG 1670
Query 1319 GATGGTGGAACATAGCAAGAAGTCAAAATCCCGGCAGAACACGAATAATCTTCCTGCTCT 1378
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1671 GATGGTGGAACATAGCAAGAAATCAAAATCCCGGCAGAGCACGAATAATCTTCCTGCTCT 1730
Query 1379 TGCGATTCTTGCAGAGGATATTGGTCATTTAGCTTTCAACGAGAAGGCGATATTTAGTCC 1438
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1731 TGCGATTCTTGCAGAGGATATTGGTCATTTAGCTTTTAATGAGAAGGCGATATTTAGTCC 1790
Query 1439 AATCTTGAAGAATTGGCACCCGCTTGCAGCTGGTGTGGCTGCAGCTACGCTTCATTCGTG 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 AATCTTGAAGAATTGGCACCCGCTTGCAGCTGGTGTGGCTGCAGCTACGCTTCATTCGTG 1850
Query 1499 CTATGGAACCGAGTTGAAGAAGTTTGTCTCGGGTATTACCGAGTTGACGCCGGATGCTAT 1558
|||||| |||||||||||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct 1851 CTATGGTACCGAGTTGAAGAAATTCGTCTCGGGTATTACTGAGTTGACGCCAGATGCTAT 1910
Query 1559 AAGAGTACTCACTGCTGCAGATAAGCTTGAGAAGGATCTGGTGCAGATTGCTGTACAAGA 1618
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1911 TAGAGTACTCACTGCTGCAGATAAGCTTGAGAAGGATCTGGTGCAAATTGCTGTACAAGA 1970
Query 1619 TGCAGTAGATAGTGAAGATGGCGGAAAATCGGTTATAAGAGAGATGCCTCCTTTTGAAGC 1678
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1971 TGCAGTAGATAGTGAAGATGGTGGAAAATCGGTTATAAGAGAGATGCCTCCTTTTGAAGC 2030
Query 1679 GGAAGTCGTTATTGGTAACCTTGTGAAATCGTGGATCAAGACCCGAGTCGATAGGCTAAA 1738
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 2031 AGAAGTCGTTATTGGTAACCTTGTGAAATCGTGGATCAAGATCCGAGTTGATAGGCTAAA 2090
Query 1739 AGAGTGGATCGACCGGAATCTCCAGCAAGAGGTATGGAATCCGAGATCGAATAAACTCGG 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 AGAGTGGATCGACCGGAATCTCCAGCAAGAGGTATGGAATCCGAGATCGAATAAACTCGG 2150
Query 1799 TATCGCTCCTTCTGCTGTGGATGTACTGAGGATGGTAGATGAGACACTGGAAGCGTTTTT 1858
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2151 TATCGCTCCTTCTGCTGTGGATGTACTGAGGATGGTAGATGAGACATTGGAAGCGTTTTT 2210
Query 1859 CTTGTTGCCGATACTTTTGCATCCAGTTTTACTTCCTGAGCTAACTTCGGGACTCGACAA 1918
|||||||||||| |||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 2211 CTTGTTGCCGATTCTTTTGCATCCAGTTTTACTTCCTGAGCTAACGTCAGGACTAGACAA 2270
Query 1919 GTGTATGCAGCATTATGTATCAAAGGCGAAATCTTCCTGCGGCTCGCGGAATACATTTCT 1978
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2271 GTGTATGCAGCATTATGTATCAAAGGCGAAATCATCCTGCGGCTCGCGGAATACGTTTCT 2330
Query 1979 ACCCGCTTTGCCTGCTTTAACAAGATGCACGGTCGGGTCCAGACTACATGGTGTATTCAA 2038
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2331 ACCCGTTTTGCCTGCTTTAACAAGATGCACGGTCGGGTCCAGACTACATGGTGTATTCAA 2390
Query 2039 GAAAAAGGAGAAGCCAATGGTAGCTTCTCACAGGAGAAAATCACAGCTGGGGACGAGTAA 2098
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2391 GAAAAAGGAGAAGCCAATGGTAGCTTCTCACAGGAGAAAATCACAGCTGGGGACGGGTAA 2450
Query 2099 TGACTCCGCGGAAATACTTCAGTTCTGTTGCAGGATCAATACTCTGCAGTATATCAGGAC 2158
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2451 TGACTCGGCGGAAATACTTCAGTTCTGTTGCAGGATCAACACTCTGCAGTATATCAGGAC 2510
Query 2159 AGAGATCGAATCATCTGGGAGAAAAACATTGGATCGTCTCCCGGAATCCGAAGTTGCGGC 2218
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 2511 AGAGATCGAATCATCTGGGAGAAAAACATTGAATCGTCTCCCGGAATCCGAAGTTGCAGC 2570
Query 2219 TTTGGATGGTAAAGGTAAAATCTTTGAACAGGCAATTGGTTATTGCTCGAAAGGAATACA 2278
|||||||| |||||||||||| ||||||||| | ||| ||||||||||||||||||||||
Sbjct 2571 TTTGGATGCTAAAGGTAAAATATTTGAACAGTCGATTAGTTATTGCTCGAAAGGAATACA 2630
Query 2279 GCAATTGTCTGAAGCAACTGCTTACAAGATCGTTTTTCACGATCTGAGCAACGTTCTCTG 2338
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 2631 GCAATTGTCTGAAGCAACTGCTTACAAGATCGTCTTCCACGATCTGAGCAATGTTCTCTG 2690
Query 2339 GGATGGTCTGTACCTCGGGGAAGTTCCTTCCTCAAGGATTGAGCCGTTTCTTCAAGAGCT 2398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2691 GGATGGTCTGTACCTCGGGGAAGTTCCTTCCTCAAGGATTGAGCCGTTTCTTCAAGAGCT 2750
Query 2399 CGAACGGTGCCTTGAGATTATCTCCTCATCGGTTCACGACAGAGTCCGAACCAGAGTCAT 2458
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2751 CGAACGGTGCCTTGAGATTATCTCCTCATCGGTTCATGACAGAGTCCGAACCAGAGTCAT 2810
Query 2459 TTCGGACATCATGAGAGCTTCTTTCGACGGGTTCTTATTGGTCCTCCTCGCAGGCGGGCC 2518
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 2811 TTCGGACATCATGAGAGCTTCTTTCGACGGGTTCTTATTGGTCCTCCTTGCAGGTGGACC 2870
Query 2519 ATCGCGTGGCTTCACAATTCAAGACTCTGCTGCCGTAGAGGAGGATTTCAAGTTTCTGTG 2578
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2871 ATCGCGTGGCTTCACAATTCAAGACTCTGCTGCCGTAGAAGAGGATTTCAAGTTTCTATG 2930
Query 2579 CGATCTTTTCTGGTCAAATGGAGACGGATTGCCTTTGGATCTAATCGAGAAGGTTTCGAC 2638
|||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct 2931 CGATCTTTTCTGGTCAAACGGAGACGGATTGCCTTTGGATTTGATCGAGAAGGTTTCGAC 2990
Query 2639 GACAGTCAAGAGTATACTTCCGCTGCTGCGCACGGATACTGATTCTTTGATTGAACGGTT 2698
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2991 GACTGTCAAGAGTATACTTCCGCTGCTGCGCACGGATACAGATTCTTTGATTGAACGGTT 3050
Query 2699 TAAAGCGGTGTGTCTCGAGAATCATGGTTCTGACAGAGGGAAGCTTCCGTTACCTCCGAC 2758
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3051 TAAAGCAGTGTGTCTGGAGAATCATGGTTCTGACAGAGGGAAGCTTCCGTTACCGCCGAC 3110
Query 2759 TTCTGGTCCGTGGAGTCCGACAGAACCAAACACACTTTTAAGAGTATTGTGTTATCGTTA 2818
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3111 TTCTGGTCCGTGGAGTCCGACAGAACCAAACACACTTTTAAGAGTATTGTGTTACCGTTA 3170
Query 2819 TGATGAGCCTGCGACTAAGTTTCTGAAAAAGACTTATAACTTGCCGAGGAAGCTAACCTG 2878
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3171 CGATGAACCTGCGACTAAGTTTCTGAAAAAGACCTATAACTTGCCGAGGAAGCTAACCTG 3230
Query 2879 AGAGTGACCTAC 2890
||||||||||||
Sbjct 3231 AGAGTGACCTAC 3242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144079460296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5