BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931385
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62220.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 488 2e-137
AT1G62060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 486 7e-137
AT1G62000.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 468 2e-131
AT1G62214.1 | Symbols: | unknown pseudogene | chr1:22987483-22... 102 3e-21
> AT1G62220.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G62000.1); Has
131 Blast hits to 122 proteins in 40 species: Archae - 0;
Bacteria - 73; Metazoa - 10; Fungi - 6; Plants - 37; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:22988196-22988844
FORWARD LENGTH=649
Length=649
Score = 488 bits (264), Expect = 2e-137
Identities = 396/458 (86%), Gaps = 15/458 (3%)
Strand=Plus/Plus
Query 1 AAGa-aaagaaaaaacaaaaGATGAATGCCACAAAGTGTGTTGTGCTTCTCGTGATTGGC 59
|||| ||| || || |||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 37 AAGATAAA-AACAATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTAGC 95
Query 60 G-TTTGTTGTGCCATTGTCACCGCAAGGCACGTCAAAGAAGTGTCCAAAGAGACCAAATT 118
| |||| ||||||||||||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct 96 GTTTTG-TGTGCCATTGTCACCGCAAGGCATGTCGAAGAAGTGTCTAAAGAGACCAAATT 154
Query 119 AGGCACCTCTCTTCCAAAAACTACTACCAAAGGCGTTGGAGCTCAGCTTTTTGCTTATGG 178
|||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| |||
Sbjct 155 AGGCACCTCTCTTCCAAAAAGTACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTGCTGG 214
Query 179 CGCTACTTACAGCACCAGTGATGTCTATAGCTTTGCTAATGCTTTTAAAAATCCCAAAGG 238
||||| ||||| |||||||||||||||| ||||| || ||| || |||||||||||
Sbjct 215 TATTACTTCCAGCAGTAGTGATGTCTATAGCTCTGCTACTGGTTTCAACAATCCCAAAGG 274
Query 239 TCCAGGGAGC-AATGCATACGAAAATGGCTACACAGGTACCAACGGAGTAGTCTAT-GCC 296
||||| || |||||||||||||||||||||||| |||||| |||| |||| || |||
Sbjct 275 TCCAGAC-GCTAATGCATACGAAAATGGCTACACAAGTACCAGCGGACAAGTC-ATTGCC 332
Query 297 AAGGGTCACAAGGCAAGAGTTTCTTCTGCAAGT-CGTTCTAAAGCTAACGGCAATGCTGA 355
||||||| ||||||||||||||||||||||||| | ||||| ||||| || ||||| |
Sbjct 333 AAGGGTCGCAAGGCAAGAGTTTCTTCTGCAAGTGC-TTCTACCGCTAAAGGTGATGCTAA 391
Query 356 AGCTGCAATGACTCACAAAGCTGCTGCTGCACGTGCAAAAGGTTTGGTAAAATCCG-ACT 414
||||||| |||||| |||||||||||||||||| ||||| ||| |||| || | | |
Sbjct 392 AGCTGCAGTGACTCGCAAAGCTGCTGCTGCACGAGCAAATGGTAAGGTAGCTTCGGCA-T 450
Query 415 CAAGGGTGAAGGGCAGTTCCTCTGGGAAGAAGAAGGGC 452
||||||||||||| |||||||| |||||||||||||
Sbjct 451 CAAGGGTGAAGGG---TTCCTCTGAGAAGAAGAAGGGC 485
> AT1G62060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G62220.1); Has
386 Blast hits to 125 proteins in 33 species: Archae - 6;
Bacteria - 295; Metazoa - 8; Fungi - 17; Plants - 46; Viruses
- 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:22941569-22942300
REVERSE LENGTH=732
Length=732
Score = 486 bits (263), Expect = 7e-137
Identities = 423/496 (85%), Gaps = 27/496 (5%)
Strand=Plus/Plus
Query 1 AAGa-aaagaaaaaacaaaaGATGAATGCCACAAAGTGTGTTGTGCTTCTCGTGATTGGC 59
|||| ||| || || |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 34 AAGATAAA-AACAATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGC 92
Query 60 -GTTTGTTGTGCCATTGTCACCGCAAGGCACGTCAAAGAAGTGTCCAAAGAGACCAAATT 118
|||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 93 ATTTTG-TGTGCCATTGTCACCGCAAGGCAGGTCGAAGAAGTGTCCAAAGAGACCAAATT 151
Query 119 AGGCACCTCTCTTCCAAAAACTACTACCAAAGGCGTTGGAGCTCAGCTTTTTGCTTATGG 178
||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||| |||
Sbjct 152 AGGCACCTCTCTTCCAAAATCTACTAACAAAGGCATTGGAGCTCAGCTTTCTGCTGCTGG 211
Query 179 CGCT-ACTTACAGCACCAGT-GATGTCTATAGCTTTGCTAATGCTTTTAAAAATCCCAAA 236
|| ||||||||| ||| | ||||| ||||| ||||| ||||||||| |||||||||
Sbjct 212 T-CTTACTTACAGCGGCAGCAG-TGTCTCTAGCTCTGCTAGTGCTTTTAACAATCCCAAA 269
Query 237 GGTCCAGGGAGCAA-TGCATACGAAAATGGCTACACAGGTACCAACGGAGTAGTCTAT-G 294
||||||||| || | ||||| ||||| |||||||||| |||||| |||| |||| || |
Sbjct 270 GGTCCAGGG-GCCAGTGCATCCGAAAGTGGCTACACAAGTACCATCGGACAAGTC-ATTG 327
Query 295 CCAAGGGTCACAAGGCAAGAGTTTCTTCTGCAAGT-CGTTCTAAAGCTA-ACGGCAATGC 352
||||||||| ||||||||||||||||||||||||| | |||| |||| | || | ||
Sbjct 328 CCAAGGGTCGCAAGGCAAGAGTTTCTTCTGCAAGTGC-TTCTGCCGCTACA-GGTGAGGC 385
Query 353 TGAAGCTGCAATGACTCACAAAGCTGCTGCTGCACGTGCAAAAGGTTTGGTAAAATCCG- 411
|| ||||||| |||||| |||||||||||||||||||||||| ||| |||| ||||
Sbjct 386 TGCAGCTGCAGTGACTCGCAAAGCTGCTGCTGCACGTGCAAAGGGTAAGGTAGCTTCCGC 445
Query 412 ACTCAAGGGTGAAGGGCAGTTCCTCTGGGAAGAAGAAG--GG-CTACAAAGGATAAAAGA 468
| |||||||||||||| |||||||| |||||||||| || | |||||||| |||||
Sbjct 446 A-TCAAGGGTGAAGGG---TTCCTCTGAGAAGAAGAAGAAGGACCACAAAGGAAAAAAG- 500
Query 469 AGAATTGAGCGTGAGG 484
|| ||||||||||||
Sbjct 501 -GA-TTGAGCGTGAGG 514
> AT1G62000.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G62080.1); Has
163 Blast hits to 56 proteins in 10 species: Archae - 0; Bacteria
- 4; Metazoa - 109; Fungi - 6; Plants - 37; Viruses
- 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:22913441-22914146
FORWARD LENGTH=706
Length=706
Score = 468 bits (253), Expect = 2e-131
Identities = 413/486 (85%), Gaps = 28/486 (6%)
Strand=Plus/Plus
Query 9 aaaaaa-caaaaGATGAATGCCACAAAGTGTGTTGTGCTTCTCGTGATTGGC-GTTTGTT 66
|||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| |
Sbjct 38 AAAAAATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCATTTTG-T 96
Query 67 GTGCCATTGTCACCGCAAGGCACGTCAAAGAAGTGTCCAAAGAGACCAAATTAGGCACCT 126
|||||||||||||||||||||| |||||||| |||||| |||||||||||||| |||
Sbjct 97 GTGCCATTGTCACCGCAAGGCAGGTCAAAGATTTGTCCACGGAGACCAAATTAGGGGCCT 156
Query 127 CTCTTCCAAAAACTACTACCAAAGGCGTTGGAGCTCAGCTTTTTGCTTA-TGGCGCTACT 185
|||||||||||||||||||||||||| ||||||||||||||| ||| | |||| | |||
Sbjct 157 CTCTTCCAAAAACTACTACCAAAGGCATTGGAGCTCAGCTTTCTGCA-ACTGGCACAACT 215
Query 186 TACAGCACCAGT-GATGTC-TATAGCTTTGCTAATGCTTTTAAAAATCCCAAAGGTCCAG 243
||||||||||| | |||| | ||||| |||||||| |||||| ||||||||||||||||
Sbjct 216 TACAGCACCAGCAG-TGTCGT-TAGCTATGCTAATGGTTTTAACAATCCCAAAGGTCCAG 273
Query 244 GGAGC-AATGCATACGAAAATGGCTACACAGGTACCAACGGAGTAGTCTA-TGCCAAGGG 301
|| || ||| ||| ||||| || | ||||| ||||| |||| |||| | |||||||||
Sbjct 274 GG-GCCAATTCATTCGAAAGTGCCAACACATTTACCAGCGGACAAGTC-ACTGCCAAGGG 331
Query 302 TCACAAGGCAAGAGTTTCTTCTGCAAGT-CGTTCTAAAGCT-AACGGCAATGCTGAAGCT 359
|| ||||||||||||||||||| ||||| | |||| ||| || ||| |||||| ||||
Sbjct 332 TCGCAAGGCAAGAGTTTCTTCTACAAGTGC-TTCTGCCGCTGAA-GGCGATGCTGCAGCT 389
Query 360 GCAATGACTCACAAAGCTGCTGCTGCACGTGCAAAAGGTTTGGTAAAATCCG-ACTCAAG 418
||| |||||| |||||||||||||||||||||||| ||| |||| |||| | |||||
Sbjct 390 GCAGTGACTCGCAAAGCTGCTGCTGCACGTGCAAACGGTAAGGTAGCTTCCGCA-TCAAG 448
Query 419 GGTGAAGGGCAGTTCCTCTGGGAAGAAGAAGGGCTACAAAGGATAAAAGAAGAATTGAGC 478
||||||||| |||||||| ||||||||||||| | || ||| ||||| || ||||||
Sbjct 449 GGTGAAGGG---TTCCTCTGAGAAGAAGAAGGGC-A-AA-GGAAAAAAG--GA-TTGAGC 499
Query 479 GTGAGG 484
||||||
Sbjct 500 GTGAGG 505
> AT1G62214.1 | Symbols: | unknown pseudogene | chr1:22987483-22987938
REVERSE LENGTH=363
Length=363
Score = 102 bits (55), Expect = 3e-21
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 76 TCACCGCAAGGCACGTCAAAGAAGTGTCCAAAGAGACCAAATTAGGCACCTCTCTTCCAA 135
|||||| ||||| ||| |||| |||||||| |||||||||||||| |||||||||||||
Sbjct 63 TCACCGTGAGGCAGGTCGAAGATGTGTCCAAGGAGACCAAATTAGGAACCTCTCTTCCAA 122
Query 136 AAACTACTACCAAAGG 151
||||||||||||||||
Sbjct 123 AAACTACTACCAAAGG 138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23157941767
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5