BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg931385 Length=486 Score E Sequences producing significant alignments: (Bits) Value AT1G62220.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 488 2e-137 AT1G62060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 486 7e-137 AT1G62000.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 468 2e-131 AT1G62214.1 | Symbols: | unknown pseudogene | chr1:22987483-22... 102 3e-21 > AT1G62220.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62000.1); Has 131 Blast hits to 122 proteins in 40 species: Archae - 0; Bacteria - 73; Metazoa - 10; Fungi - 6; Plants - 37; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:22988196-22988844 FORWARD LENGTH=649 Length=649 Score = 488 bits (264), Expect = 2e-137 Identities = 396/458 (86%), Gaps = 15/458 (3%) Strand=Plus/Plus Query 1 AAGa-aaagaaaaaacaaaaGATGAATGCCACAAAGTGTGTTGTGCTTCTCGTGATTGGC 59 |||| ||| || || |||||||||||||||||||||| ||||||||||||||||||| || Sbjct 37 AAGATAAA-AACAATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTAGC 95 Query 60 G-TTTGTTGTGCCATTGTCACCGCAAGGCACGTCAAAGAAGTGTCCAAAGAGACCAAATT 118 | |||| ||||||||||||||||||||||| ||| |||||||||| |||||||||||||| Sbjct 96 GTTTTG-TGTGCCATTGTCACCGCAAGGCATGTCGAAGAAGTGTCTAAAGAGACCAAATT 154 Query 119 AGGCACCTCTCTTCCAAAAACTACTACCAAAGGCGTTGGAGCTCAGCTTTTTGCTTATGG 178 |||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| ||| Sbjct 155 AGGCACCTCTCTTCCAAAAAGTACTACCAAAGGCATTGGAGCTCAGCTTTCTGCTGCTGG 214 Query 179 CGCTACTTACAGCACCAGTGATGTCTATAGCTTTGCTAATGCTTTTAAAAATCCCAAAGG 238 ||||| ||||| |||||||||||||||| ||||| || ||| || ||||||||||| Sbjct 215 TATTACTTCCAGCAGTAGTGATGTCTATAGCTCTGCTACTGGTTTCAACAATCCCAAAGG 274 Query 239 TCCAGGGAGC-AATGCATACGAAAATGGCTACACAGGTACCAACGGAGTAGTCTAT-GCC 296 ||||| || |||||||||||||||||||||||| |||||| |||| |||| || ||| Sbjct 275 TCCAGAC-GCTAATGCATACGAAAATGGCTACACAAGTACCAGCGGACAAGTC-ATTGCC 332 Query 297 AAGGGTCACAAGGCAAGAGTTTCTTCTGCAAGT-CGTTCTAAAGCTAACGGCAATGCTGA 355 ||||||| ||||||||||||||||||||||||| | ||||| ||||| || ||||| | Sbjct 333 AAGGGTCGCAAGGCAAGAGTTTCTTCTGCAAGTGC-TTCTACCGCTAAAGGTGATGCTAA 391 Query 356 AGCTGCAATGACTCACAAAGCTGCTGCTGCACGTGCAAAAGGTTTGGTAAAATCCG-ACT 414 ||||||| |||||| |||||||||||||||||| ||||| ||| |||| || | | | Sbjct 392 AGCTGCAGTGACTCGCAAAGCTGCTGCTGCACGAGCAAATGGTAAGGTAGCTTCGGCA-T 450 Query 415 CAAGGGTGAAGGGCAGTTCCTCTGGGAAGAAGAAGGGC 452 ||||||||||||| |||||||| ||||||||||||| Sbjct 451 CAAGGGTGAAGGG---TTCCTCTGAGAAGAAGAAGGGC 485 > AT1G62060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62220.1); Has 386 Blast hits to 125 proteins in 33 species: Archae - 6; Bacteria - 295; Metazoa - 8; Fungi - 17; Plants - 46; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:22941569-22942300 REVERSE LENGTH=732 Length=732 Score = 486 bits (263), Expect = 7e-137 Identities = 423/496 (85%), Gaps = 27/496 (5%) Strand=Plus/Plus Query 1 AAGa-aaagaaaaaacaaaaGATGAATGCCACAAAGTGTGTTGTGCTTCTCGTGATTGGC 59 |||| ||| || || |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 34 AAGATAAA-AACAATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGC 92 Query 60 -GTTTGTTGTGCCATTGTCACCGCAAGGCACGTCAAAGAAGTGTCCAAAGAGACCAAATT 118 |||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 93 ATTTTG-TGTGCCATTGTCACCGCAAGGCAGGTCGAAGAAGTGTCCAAAGAGACCAAATT 151 Query 119 AGGCACCTCTCTTCCAAAAACTACTACCAAAGGCGTTGGAGCTCAGCTTTTTGCTTATGG 178 ||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||| ||| Sbjct 152 AGGCACCTCTCTTCCAAAATCTACTAACAAAGGCATTGGAGCTCAGCTTTCTGCTGCTGG 211 Query 179 CGCT-ACTTACAGCACCAGT-GATGTCTATAGCTTTGCTAATGCTTTTAAAAATCCCAAA 236 || ||||||||| ||| | ||||| ||||| ||||| ||||||||| ||||||||| Sbjct 212 T-CTTACTTACAGCGGCAGCAG-TGTCTCTAGCTCTGCTAGTGCTTTTAACAATCCCAAA 269 Query 237 GGTCCAGGGAGCAA-TGCATACGAAAATGGCTACACAGGTACCAACGGAGTAGTCTAT-G 294 ||||||||| || | ||||| ||||| |||||||||| |||||| |||| |||| || | Sbjct 270 GGTCCAGGG-GCCAGTGCATCCGAAAGTGGCTACACAAGTACCATCGGACAAGTC-ATTG 327 Query 295 CCAAGGGTCACAAGGCAAGAGTTTCTTCTGCAAGT-CGTTCTAAAGCTA-ACGGCAATGC 352 ||||||||| ||||||||||||||||||||||||| | |||| |||| | || | || Sbjct 328 CCAAGGGTCGCAAGGCAAGAGTTTCTTCTGCAAGTGC-TTCTGCCGCTACA-GGTGAGGC 385 Query 353 TGAAGCTGCAATGACTCACAAAGCTGCTGCTGCACGTGCAAAAGGTTTGGTAAAATCCG- 411 || ||||||| |||||| |||||||||||||||||||||||| ||| |||| |||| Sbjct 386 TGCAGCTGCAGTGACTCGCAAAGCTGCTGCTGCACGTGCAAAGGGTAAGGTAGCTTCCGC 445 Query 412 ACTCAAGGGTGAAGGGCAGTTCCTCTGGGAAGAAGAAG--GG-CTACAAAGGATAAAAGA 468 | |||||||||||||| |||||||| |||||||||| || | |||||||| ||||| Sbjct 446 A-TCAAGGGTGAAGGG---TTCCTCTGAGAAGAAGAAGAAGGACCACAAAGGAAAAAAG- 500 Query 469 AGAATTGAGCGTGAGG 484 || |||||||||||| Sbjct 501 -GA-TTGAGCGTGAGG 514 > AT1G62000.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62080.1); Has 163 Blast hits to 56 proteins in 10 species: Archae - 0; Bacteria - 4; Metazoa - 109; Fungi - 6; Plants - 37; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:22913441-22914146 FORWARD LENGTH=706 Length=706 Score = 468 bits (253), Expect = 2e-131 Identities = 413/486 (85%), Gaps = 28/486 (6%) Strand=Plus/Plus Query 9 aaaaaa-caaaaGATGAATGCCACAAAGTGTGTTGTGCTTCTCGTGATTGGC-GTTTGTT 66 |||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| | Sbjct 38 AAAAAATCAAAAGATGAATGCCACAAAGTTTGTTGTGCTTCTCGTGATTGGCATTTTG-T 96 Query 67 GTGCCATTGTCACCGCAAGGCACGTCAAAGAAGTGTCCAAAGAGACCAAATTAGGCACCT 126 |||||||||||||||||||||| |||||||| |||||| |||||||||||||| ||| Sbjct 97 GTGCCATTGTCACCGCAAGGCAGGTCAAAGATTTGTCCACGGAGACCAAATTAGGGGCCT 156 Query 127 CTCTTCCAAAAACTACTACCAAAGGCGTTGGAGCTCAGCTTTTTGCTTA-TGGCGCTACT 185 |||||||||||||||||||||||||| ||||||||||||||| ||| | |||| | ||| Sbjct 157 CTCTTCCAAAAACTACTACCAAAGGCATTGGAGCTCAGCTTTCTGCA-ACTGGCACAACT 215 Query 186 TACAGCACCAGT-GATGTC-TATAGCTTTGCTAATGCTTTTAAAAATCCCAAAGGTCCAG 243 ||||||||||| | |||| | ||||| |||||||| |||||| |||||||||||||||| Sbjct 216 TACAGCACCAGCAG-TGTCGT-TAGCTATGCTAATGGTTTTAACAATCCCAAAGGTCCAG 273 Query 244 GGAGC-AATGCATACGAAAATGGCTACACAGGTACCAACGGAGTAGTCTA-TGCCAAGGG 301 || || ||| ||| ||||| || | ||||| ||||| |||| |||| | ||||||||| Sbjct 274 GG-GCCAATTCATTCGAAAGTGCCAACACATTTACCAGCGGACAAGTC-ACTGCCAAGGG 331 Query 302 TCACAAGGCAAGAGTTTCTTCTGCAAGT-CGTTCTAAAGCT-AACGGCAATGCTGAAGCT 359 || ||||||||||||||||||| ||||| | |||| ||| || ||| |||||| |||| Sbjct 332 TCGCAAGGCAAGAGTTTCTTCTACAAGTGC-TTCTGCCGCTGAA-GGCGATGCTGCAGCT 389 Query 360 GCAATGACTCACAAAGCTGCTGCTGCACGTGCAAAAGGTTTGGTAAAATCCG-ACTCAAG 418 ||| |||||| |||||||||||||||||||||||| ||| |||| |||| | ||||| Sbjct 390 GCAGTGACTCGCAAAGCTGCTGCTGCACGTGCAAACGGTAAGGTAGCTTCCGCA-TCAAG 448 Query 419 GGTGAAGGGCAGTTCCTCTGGGAAGAAGAAGGGCTACAAAGGATAAAAGAAGAATTGAGC 478 ||||||||| |||||||| ||||||||||||| | || ||| ||||| || |||||| Sbjct 449 GGTGAAGGG---TTCCTCTGAGAAGAAGAAGGGC-A-AA-GGAAAAAAG--GA-TTGAGC 499 Query 479 GTGAGG 484 |||||| Sbjct 500 GTGAGG 505 > AT1G62214.1 | Symbols: | unknown pseudogene | chr1:22987483-22987938 REVERSE LENGTH=363 Length=363 Score = 102 bits (55), Expect = 3e-21 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 76 TCACCGCAAGGCACGTCAAAGAAGTGTCCAAAGAGACCAAATTAGGCACCTCTCTTCCAA 135 |||||| ||||| ||| |||| |||||||| |||||||||||||| ||||||||||||| Sbjct 63 TCACCGTGAGGCAGGTCGAAGATGTGTCCAAGGAGACCAAATTAGGAACCTCTCTTCCAA 122 Query 136 AAACTACTACCAAAGG 151 |||||||||||||||| Sbjct 123 AAACTACTACCAAAGG 138 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23157941767 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5