BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931389

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22890.1 | Symbols:  | Kua-ubiquitin conjugating enzyme hybr...   468    2e-131


> AT2G22890.1 | Symbols:  | Kua-ubiquitin conjugating enzyme hybrid 
localisation domain | chr2:9742393-9743347 REVERSE LENGTH=955
Length=955

 Score =  468 bits (253),  Expect = 2e-131
 Identities = 324/358 (91%), Gaps = 6/358 (2%)
 Strand=Plus/Plus

Query  4    TTCATGGCTTTGTAAGCATGTTTGCATTTAGCGTGTTGTTTTGTCAGCTGTTCCATACTT  63
            ||||||||||||||||||||||||||||| | || |||||||||||| |||||||| |||
Sbjct  544  TTCATGGCTTTGTAAGCATGTTTGCATTTTGTGTATTGTTTTGTCAGTTGTTCCATGCTT  603

Query  64   GGGCTCATGGAACCAAGAGCAAACTTCCATCTCTTGTGGTGGGGTTGCAAGACATTGGGC  123
            ||||||||||||| |||||||| |||||| |||||||||| |||||||||||||||||||
Sbjct  604  GGGCTCATGGAACGAAGAGCAAGCTTCCACCTCTTGTGGTTGGGTTGCAAGACATTGGGC  663

Query  124  TGCTTGTTTCACGTG-TACATCATGTGAATCATCACCGAGCACCGTATAATAACAATTAC  182
            | ||||||||||| | |||||||  ||||||||||||||||||||||||| |||||||||
Sbjct  664  TTCTTGTTTCACG-GATACATCACATGAATCATCACCGAGCACCGTATAACAACAATTAC  722

Query  183  TGCGTAGTGAGTGGGGTTTGGAACAAGGTTTTGGATGAAAGCAAGGTCTTTGAGGCAATG  242
            ||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||
Sbjct  723  TGCGTAGTGAGTGGGGTGTGGAACAAGGTTTTGGATGAAAGCAATGTCTTTAAGGCAATG  782

Query  243  GAGATGGTGTTATATTTC-AAGATGGGGGTGAGACCGAGGTCATGGACCGATTCAAACTC  301
            ||||||||||| ||| || ||  ||||| ||||||||||||||||||||||  |||||| 
Sbjct  783  GAGATGGTGTTGTATATCCAACTTGGGG-TGAGACCGAGGTCATGGACCGAGCCAAACTA  841

Query  302  CGATTGGACGGAAAAAACCGACATATTCAAATGTTAGCGG-CACTTTTAGATATATTC  358
            ||| || |||||| |||||||||||| ||||||||||| | ||||||||| |||||||
Sbjct  842  CGAATG-ACGGAAGAAACCGACATATCCAAATGTTAGCCGTCACTTTTAGCTATATTC  898



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16789428166


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5