BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931395
Length=2284
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19950.2 | Symbols: GC1 | golgin candidate 1 | chr2:8616073-... 2337 0.0
> AT2G19950.2 | Symbols: GC1 | golgin candidate 1 | chr2:8616073-8621435
REVERSE LENGTH=2617
Length=2617
Score = 2337 bits (1265), Expect = 0.0
Identities = 1457/1546 (94%), Gaps = 28/1546 (2%)
Strand=Plus/Plus
Query 4 GTTTCAATTCTGATTCATCAATGGCGTCTTGGCTCAAAGCTGCCGAAGATTTATTTGAGG 63
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 197 GTTTCAATTTTGATTCATCAATGGCGTCTTGGCTTAAAGCTGCCGAAGATTTATTTGAGG 256
Query 64 TTGTCGATCGAAGAGCAAAATCTGTGGTTGAAGAGCTTTCGGAAGAACAG-ACTGATTTG 122
|||| ||||||||||||||||| ||||||||||| ||||| ||||||||| || ||||||
Sbjct 257 TTGTTGATCGAAGAGCAAAATCAGTGGTTGAAGATCTTTCAGAAGAACAGAAC-GATTTG 315
Query 123 CAGTTGCCAGCTTCTGGTAGGAAAGGGTCTCAAGGGAAGAGAACAAGTTCAAAGAAAAAG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 CAGTTGCCAGCTTCTGGTAGGAAAGGGTCTCAAGGGAAGAGAACAAGTTCAAAGAAAAAG 375
Query 183 GCTCGACAGAAACTTGTAAAAGAAGAATCTTCTAACAAAAGAGATTTTTCTGGTGATCAA 242
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 376 GCTCGACAGAAACTTGTAAAAGAAGAATCTTCTAACAAAAGAGATTCTTCTGGTGATCAA 435
Query 243 TCTGGCCCAGGGGTATCACAGTCAGAGGTGCCTCCATC---CA---CTG-----AC-GA- 289
||||||||||||||||||||||||||||| |||||||| | ||| || ||
Sbjct 436 TCTGGCCCAGGGGTATCACAGTCAGAGGTTCCTCCATCTAAAAGTTCTGTTTCCACTGAC 495
Query 290 -AG-CATCTTCATCAGGGCCTGTCTTGCAGACAA-ATGAGA-T-A-AGGACTGATGCAGA 343
|| ||||||| |||||||||||||||| ||||| | |||| | | ||||||||||||
Sbjct 496 GAGACATCTTCTTCAGGGCCTGTCTTGCTGACAAGA-GAGATTCACCCGACTGATGCAGA 554
Query 344 TGTCCAGAGTGTTCAATCACTTCCACAATCAGTGGCAGATACAAAAAGTGATGATGCTGC 403
|||||||||||||| ||||||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 555 TGTCCAGAGTGTTCTATCACTTCCACTATCAGTGGCTGATACAAAAAGTGACGATGCTGC 614
Query 404 TGTGGTAGGTTC-AGAATCTGTTGTGGACGCTGATGGAGCTGAGTCAAAGCATGCTGATA 462
||| ||| | || |||| | ||||||| | |||| | ||||||||||||||||||||
Sbjct 615 TGTTGTA-GCTCAAGAAAGTATTGTGGATGGTGATCGTTCTGAGTCAAAGCATGCTGATG 673
Query 463 GAGATATTCCAAATGATTCTTTGGTGCAACCATCACCATCTTTACCTGACAAAGAAATTG 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 GAGATATTCCAAATGATTCTTTGGTGCAACCATCACCATCTTTACCTGACAAAGAAATTG 733
Query 523 AGGTCGCTGTCAGTGAAAACCTGGTTGATGTTCCCAAAAATGGCGCACAACGAGAGTTAG 582
|||||| ||||||||| |||||| | |||| ||||||||||||| |||||||||||||||
Sbjct 734 AGGTCGTTGTCAGTGAGAACCTGATGGATGCTCCCAAAAATGGCACACAACGAGAGTTAG 793
Query 583 TTGATTCTTCAAAAAGAGATC-TGGAGAAACTGGAATCTGTAGTGCATGTTCCTTCGGTT 641
|||||||||||||||||| | ||||||| ||||| ||||||||||||| ||||||||||
Sbjct 794 ATGATTCTTCAAAAAGAGA-CGTGGAGAATCTGGATTCTGTAGTGCATGCTCCTTCGGTT 852
Query 642 GGTGAAGGGAATGTGGCTCAAAGCACGGGCGATGAGGTGAAAGTTGGCACTTCAATCAAT 701
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 AATGAAGGAAATGTGGCTCAAAGCACGGGCGATGAGGTGAAAGTTGGCACTTCAATCAAT 912
Query 702 CTGGAGAAAGAACAGGAACCGAAAGTTCCTGACACCTCAACCAATTTGAAAAGAGAGCAA 761
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 913 CTGGAGAAAGAACAGGAACCGAAAGTTCCTGTCACCTCAACCAATCTGAAAAGAGAGCAA 972
Query 762 GATCGTAGAGCTGATACAACTTCCGTTAAGATTCAAGATCAACTTGAAGAGGCTCAGGGG 821
||||||||||||||||| |||||| | ||||||||||||||||||||||||||||| ||
Sbjct 973 GATCGTAGAGCTGATACGACTTCCATGAAGATTCAAGATCAACTTGAAGAGGCTCAAGGT 1032
Query 822 TTGCTAAAAGCTACCA-TTTCCACTGGGCAGTCAAAAGAAGCCAGGTTAGCAAGGGTTTG 880
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 TTGCTAAAAGCTA-CAGTTTCCACTGGGCAGTCAAAAGAAGCCAGGTTAGCAAGGGTTTG 1091
Query 881 TGCTGGACTTTCATCCCGTCTTCAAGAAATTAAAGCGGAAAATGCACAGTTGGAAGAGCT 940
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 TGCTGGACTTTCGTCCCGTCTTCAAGAAATTAAAGCGGAAAATGCACAGTTGGAAGAGCT 1151
Query 941 TCTCACTGCAGAGCAAGAGCTTACCAAGTCATATGAAGCTAGCATTAGACAGTTGCAAAA 1000
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1152 TCTCACTGCAGAGCAAGAGCTTACCAAGTCATATGAAGCTAGCATTAGACACTTGCAAAA 1211
Query 1001 AGATCTGTCAGCTGCTAAAAGTGAAGTGACGAAAGTAGAGTCAAGCATGGTTGAGGCACT 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 AGATCTGTCAGCTGCTAAAAGTGAAGTGACGAAAGTAGAGTCAAGCATGGTTGAGGCACT 1271
Query 1061 AGCAGCTAAGAACTCAGAGATAGAAACACTTGTCAGCGCAATGGATGCCCTGAAAAATCA 1120
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1272 AGCAGCTAAAAACTCAGAGATAGAAACACTTGTCAGCGCAATGGATGCCCTTAAAAATCA 1331
Query 1121 GGCTGCTCTGAACGAAGGAAAATTGTCGTCTCTCCAGGGAGATATGGAGTCTATTTTGAG 1180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1332 GGCTGCTCTGAACGAAGGAAAATTGTCGTCTCTCCAGGGAGACATGGAGTCTATTATGAG 1391
Query 1181 AAACAGAGAATTGGCTGAGACTAGGATGATGCAGGCATTGCGGGAGGAGCTTGCCACTAC 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 AAACAGAGAATTGGCTGAGACTAGGATGATGCAGGCATTGCGGGAGGAGCTTGCCACTAC 1451
Query 1241 TGAAAGGAGAGCTGAAGAGGAGCGTTCTGCACATAATGCGACAAAAATGGCTGCCATGGA 1300
|||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1452 TGAAAGGAGAGCCGAAGAGGAGCGTTCTGCTCATAATGCCACAAAAATGGCTGCCATGGA 1511
Query 1301 AAGGGAAAGGGAACTAGAGCACAGGGCGGTGGATGCTTCCACAGCACTTGTTAGAATTCA 1360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1512 AAGGGAAAGGGAACTAGAGCACAGGGCTGTGGATGCTTCCACAGCACTTGTTAGAATTCA 1571
Query 1361 GAGAATTGCTGATGAAAGGACAGCGAAAGTGGCAGATCTTGAACAGAAGGTGGCATTGCT 1420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1572 GAGAATTGCTGATGAAAGGACAGCGAAAGTGGCAGATTTTGAACAGAAGGTGGCATTGCT 1631
Query 1421 TGAGGCCGAATGTACATCTCTGAATCAAGAGCTGCAAGATATGGAAGTTCGTGCTCGCAG 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 TGAGGCCGAATGTACATCTCTGAATCAAGAGCTGCAAGATATGGAAGTTCGTGCTCGCAG 1691
Query 1481 AGGACAAAAGAAGTCCCCAGATGAAGCAAACCAAGTGATCCAGATT 1526
||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1692 AGGACAAAAGAAGGCTCCAGATGAAGCAAACCAAGTGATCCAGATT 1737
Score = 857 bits (464), Expect = 0.0
Identities = 500/518 (97%), Gaps = 0/518 (0%)
Strand=Plus/Plus
Query 1560 CAGATTCAAGCATGGCAGGACGAAGTGGACCGTGCTCGGCAAGGTCAAAGAGATGCTGAG 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 CAGATTCAAGCATGGCAGGACGAAGTGGACCGTGCTCGGCAAGGTCAAAGAGATGCTGAG 1791
Query 1620 GAGAAACTTTCTTCAATGGAGGCTGAAATGCAAAAGTTGAGGGTTGAAATGGCAGCCATG 1679
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1792 GAGAAACTTTCTTTGATGGAGGCTGAAATGCAAAAGTTAAGGGTTGAAATGGCAGCCATG 1851
Query 1680 AAGAGGGATGCAGAACATTACTCACGCCAGGAGCACACGGAGCTGGAGAAACGCTACCGT 1739
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 1852 AAGAGGGATGCAGAACATTACTCACGCCAGGAGCATACAGAGCTGGAGAAACGATACCGT 1911
Query 1740 GAACTAACAGATTTACTGTACTATAAGCAAACGCAACTAGAGACTATGGCGAGTGAGAAG 1799
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1912 GAACTAACAGATTTACTGTACTATAAGCAAACACAACTAGAGACTATGGCGAGTGAGAAG 1971
Query 1800 GCTGCAGCGGAGTTTCAGTTGGAGAAAGAGGTCAAACGTCTTCACGAAGCACAGGTAGAG 1859
|||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1972 GCTGCAGCAGAGTTTCAGTTGGAAAAAGAGGTCAAACGTCTTCATGAAGCACAGGTAGAG 2031
Query 1860 GTAGAAAGAAGCAGAGTTTCGCGACGCCCATCAGCAACTTGGGAAGAAGATTCTGAGATT 1919
||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2032 GTAGAAAAAAGTAGAGTTTCGCGACGCGCATCAGCAACTTGGGAAGAAGATTCTGAGATT 2091
Query 1920 AAGACACTTGAGCCTCTTCCATTGTATCACCGACACATGGCTACAGCGAGCACACAGTTG 1979
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2092 AAGACACTTGAGCCTCTTCCATTGTATCACAGACACATGGCTACAGCGAGCACACAGTTG 2151
Query 1980 CAGAATGCCGTGAAACTGATAGACTCGGGAGCTGTAAGGGCCACTAGGTTCCTTTGGCGG 2039
|||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 2152 CAGAATGCAGTGAAACTGTTAGACTCAGGAGCTGTAAGGGCCACTAGGTTCCTTTGGCGG 2211
Query 2040 TACCCAATAGCACGGATTTTCCTACTTTTTTACCTTGT 2077
||||||||||||||||| ||||||||||||||||||||
Sbjct 2212 TACCCAATAGCACGGATGTTCCTACTTTTTTACCTTGT 2249
Score = 187 bits (101), Expect = 4e-46
Identities = 116/123 (94%), Gaps = 1/123 (1%)
Strand=Plus/Plus
Query 2163 GTCTTTGTTCATCTCTTCTTGATGTATCTATTACACCGACTCCAGGAGCAAGCCGAGGCC 2222
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2248 GTCTTTGTTCATCTCTTCTTGATGTATCTAATACACCGACTCCAGGAGCAAGCCGAGGCC 2307
Query 2223 CAGGAAGTTGCCGAAATGACCAACAACGTTTTCAGACCATAACAGACTCCATGAGAA-GC 2281
||||||||||| | ||||||||||||||||||||||| |||||||| ||||| |||| ||
Sbjct 2308 CAGGAAGTTGCGGCAATGACCAACAACGTTTTCAGACTATAACAGATTCCATAAGAAAGC 2367
Query 2282 AAC 2284
|||
Sbjct 2368 AAC 2370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113352830610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5