BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931400
Length=2845
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19910.1 | Symbols: | RNA-dependent RNA polymerase family p... 1615 0.0
AT2G19920.1 | Symbols: | RNA-dependent RNA polymerase family p... 756 0.0
AT2G19930.1 | Symbols: | RNA-dependent RNA polymerase family p... 466 5e-130
> AT2G19910.1 | Symbols: | RNA-dependent RNA polymerase family
protein | chr2:8595820-8600757 REVERSE LENGTH=2979
Length=2979
Score = 1615 bits (874), Expect = 0.0
Identities = 998/1059 (94%), Gaps = 4/1059 (0%)
Strand=Plus/Plus
Query 1769 AGTTTACAGGAATCCTGGATTACATTTTGGAGATATACATGTGCTTAAGGCTACATATGT 1828
||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 1923 AGTTTACAGAAATCCTGGATTACATTTTGGAGACATACATGTACTTAAGGCTACCTATGT 1982
Query 1829 TAAGGCCTTAGAAGACTATGTCGGAAATTCCAAGTATGCTGTGTTCTTCCCTCAGAAAGG 1888
||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||
Sbjct 1983 TAAGGCCTTAGAAGACTATGTTGGAAATGCCAAGTTTGCTGTGTTCTTCCCTCAGAAAGG 2042
Query 1889 TCCGAGATCCTTGGGTGATGAGATTGCAGGTGGTGACTTTGATGGCGATATGTATTTCAT 1948
||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2043 TCCAAGATCCTTGGGCGATGAGATTGCTGGTGGTGACTTTGATGGCGATATGTATTTCAT 2102
Query 1949 ATCCAGAAATCCCAAGCTACTGGAATACTTCAAGCCAAGTGAACCATGGGTGAGTTCTTC 2008
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2103 ATCCAGAAATCCCAAGCTACTGGAACACTTCAAGCCAAGTGAACCATGGGTGAGTTCTTC 2162
Query 2009 TAAACCTAGTAAAATTTACTCTGGAAGAAAGCCAAGTGAACTATCAGAAGAAGAGTTGGA 2068
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2163 TAAACCTAGTAAAATTTACTGTGGAAGAAAGCCAAGTGAACTATCAGAAGAAGAGTTGGA 2222
Query 2069 AGAAGAGCTTTTCAAAATGTTCTTAAATGCAAGATTTCGTCCGAGCGACGTTATAGGGAT 2128
||||||||| ||||||||||||||||| ||||||||| || ||| ||||||||||||||
Sbjct 2223 AGAAGAGCTATTCAAAATGTTCTTAAAAGCAAGATTTTGTAAGAGAGACGTTATAGGGAT 2282
Query 2129 GGCTGCAGATTGCTGGCTAGGAATAATGGACCCTCTCCTCACCTTAGGAGCTGAGAGTGC 2188
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 2283 GGCTGCAGATTGCTGGCTAGGAATAATGGACCCTTTCCTCACCTTAGGAGATGAGAGTGC 2342
Query 2189 GAAGGAAAAATATGAAAGGAACAAGAATATTCTTAAGTTGATTGATATATATTATGATGC 2248
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2343 TAAGGAAAAATATGAAAGGAAGAAGAATATTCTTAAGTTGATTGATATATACTATGATGC 2402
Query 2249 TCTTGATGCACCAAAAAAGGGGGCTAAGGTCGATCTCCCACCCGACCTAGAGATCAAAAA 2308
|||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 2403 TCTTGATGCACCAAAAAAGGGGGCTAAGGTTGATCTCCCGCCCGATCTAGAGATCAAAAA 2462
Query 2309 TTTTCCACATTACATGGAGCGTGACCCTAAGAGAGATTTCAGGTCGACTTCTATTCTTGG 2368
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2463 TTTTCCACATTACATGGAGCGTGACCCTAAGAGAGATTTCAGGTCCACTTCTATTCTTGG 2522
Query 2369 ATTAATCTTTGACACTGTAGATTCCCAGAATGCAGAGGAACCCCCACCATCTGAAATCAG 2428
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 2523 ATTAATCTTTGACACTGTGGATTCTCATAATGCAGAGGAACCCCCACCATCTGAAATCAG 2582
Query 2429 TAAACTCTGGTATTTTGAAGATGAACCGGTCCCTAAGTCTCACATGGATAAATTTACATC 2488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2583 TAAACTCTGGTATTTTGAAGATGAACCGGTCCCTAAGTCTCACATGGATAAATTTACATC 2642
Query 2489 CTGGTACGAGAATTACAGA-GCTGAAATGTCCCAAGCGATGGA-GGAAACTGATAAGGTT 2546
|||||||||||||||| || | ||||||||||||||||||| | ||||||||||||||||
Sbjct 2643 CTGGTACGAGAATTACCGAAG-TGAAATGTCCCAAGCGATG-ATGGAAACTGATAAGGTT 2700
Query 2547 AAGAAGAAGCAATTAGCCAATGAAGTTATCCAGAGATACAAGCAGGATTTCTATGGCGCT 2606
|||| ||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2701 AAGAGGAATCAATTAACCAATGAAGTTATCCAGAGGTACAAGCAGGATTTCTATGGCGCT 2760
Query 2607 GCAAGGTTTGAAGACAGCAACAAAAGTCTGGAAGAACTCTACCCCCAAGCCTTGGCACTC 2666
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2761 GCAGGGTTTGAAGACAGCAATAAAAGTCTGGAAGAACTCTACCCCCAAGCCTTGGCACTC 2820
Query 2667 TACAACATCGTTTATGATTTTGCCTTTCCCGAAGGTGTTTCGAAATGCGCGTTTGTCTGG 2726
|||||| ||||||| |||| |||| ||| ||||||||| ||||||| | |||| ||||
Sbjct 2821 TACAACGTCGTTTACGATTATGCCATTCAGGAAGGTGTTGCGAAATGTACATTTGCCTGG 2880
Query 2727 AAGGTTGCAGGACCGGTCCTATGCAGATTTTACCTTAAGAAAACGCAGGAGAAATTAGTA 2786
|| ||||||||||||||||| |||| ||||||||||||||||||| |||| |||| ||||
Sbjct 2881 AATGTTGCAGGACCGGTCCTGTGCAAATTTTACCTTAAGAAAACGAAGGATAAATCAGTA 2940
Query 2787 GTGGCTTCAACCTCTGTGCTTAAAAAGATTTGGGGTTGA 2825
||||||||||| ||||||||||||||| ||| |||||||
Sbjct 2941 GTGGCTTCAACGTCTGTGCTTAAAAAGCTTTTGGGTTGA 2979
Score = 1288 bits (697), Expect = 0.0
Identities = 772/809 (95%), Gaps = 2/809 (0%)
Strand=Plus/Plus
Query 963 GTTTTCAAAGATGGAGGGAAAGAAGAGAAGAAGAAAGACGCTGCTACAAAGGGAGTGAAA 1022
|||||||||||||||||||||||||||||||||||||| | | ||||||||||||| |||
Sbjct 868 GTTTTCAAAGATGGAGGGAAAGAAGAGAAGAAGAAAGATGTTTCTACAAAGGGAGTTAAA 927
Query 1023 TGCTACTTTATACGCACAGACTCGACAGCTTCAAATGATATGCGAAACCCCTATATCTTC 1082
|||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||
Sbjct 928 TGCTACTTTATACGCACAGACTCGACAGCTTCAATTGATATGCAAAATCCCTATATCTTC 987
Query 1083 TCCGGAAAGTCAATGCATGAAGCGCGTATGCATTTTATGCATGTGAATACTTTGTCATCT 1142
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 988 GCCGGAAAGTCAATGCATGAAGCACGTATGCATTTTATGCATGTGAATACTTTGTCATCT 1047
Query 1143 TTGCCCAACTATATGGCAAGGTTTTCTTTAATTCTGTCAAAGACTAAAACGCTCGAAGTT 1202
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 TTGCCCAACTATATGTCAAGGTTTTCTTTAATTCTGTCAAAGACTAAAACGCTCGAAGTT 1107
Query 1203 GACATGACTGGGATTACCTTCGAGCAAATTGATGATATACACTGCCATGATCAAGATAAT 1262
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| ||
Sbjct 1108 GACATGACTGGAATTACCTTTGAGCAAATCGATGATATACACTGCCATGATCAAGATGAT 1167
Query 1263 AAGGATGTTCTTGACAAGAATGGGAAACCTTGTATACATTCAGATGGAACTGGCTACATC 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 AAGGATGTTCTTGACAAGAATGGGAAACCTTGTATACATTCAGATGGAACTGGCTACATC 1227
Query 1323 TCTGAGGACCTTGCTCGAATGTGTCCAGTTAATATTTTTAAAGGGAAATCTATGAGAAGT 1382
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 TCTGAGGACCTTGCTCGGATGTGTCCAGTTAATATTTTTAAAGGGAAATCTATGAGAAGT 1287
Query 1383 AACAATATTCAGAGTAAGA-TTCCAAATATTGAAGGACAGGGACCATGTGGCCAAGAGCC 1441
||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct 1288 AACAATATTCAGAGTAAGAATTT-AAATTTTGAAGGACAGGGACCATGTGGCCAAGAGCC 1346
Query 1442 GCCTCTGCTGATCCAGTTTCGGATGTTTCATAATGGCTATGCTGTTAAGGGAACTTTTCT 1501
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1347 GCCTCTGCTGATCCAGTTTCGGATTTTTTATAATGGCTATGCTGTTAAGGGAACTTTTCT 1406
Query 1502 CACAAACAAGAAACTTCCTCCTTGGACTGTCCAGGTTCGGCCTTCTATGATCAAGGTGAA 1561
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
Sbjct 1407 CACAAACAAGAAACTTCCTCCTCGGACTGTCCAGGTTCGACCTTCTATGATCAAGGTGTA 1466
Query 1562 TGAAGATCAAACCATGTCAAATTTTAGTACCTTTAACTCCCTGGAGGTAGTCACTACAAG 1621
|||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1467 TGAAGATCGAACCTTGTCAAATCTTAGTACCTTTAACTCCTTGGAGGTAGTCACTACAAG 1526
Query 1622 TAATCCACCAAGAAATGCGAGGCTATCAAGAAATTTGGTCGCTCTGCTTAGTTATGGAGG 1681
||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||
Sbjct 1527 TAATCCACCAAGAAAGGCGAGGCTATCAAGAAATTTGGTGGCGCTACTTAGTTATGGAGG 1586
Query 1682 AGTCCCTAATGACTTCTTTTTGAATATACTGCGGAACACATTGGAAGAGTCCAAAACCAT 1741
|||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||
Sbjct 1587 AGTCCCTAATGACTTCTTTTTGAATATATTGCGCAACACGCTGGAAGAGTCCAAAACCAT 1646
Query 1742 ATTCTACAGCGAACGTGCTGCGTTTAAAG 1770
||||||||| |||||||||||||||||||
Sbjct 1647 ATTCTACAGTGAACGTGCTGCGTTTAAAG 1675
Score = 1101 bits (596), Expect = 0.0
Identities = 788/875 (90%), Gaps = 35/875 (4%)
Strand=Plus/Plus
Query 21 ATGATGAATTACGGCAGCGATGAAGTTTCTCCGCGGACAGAGATCGCTCTTCTGGGTAGT 80
|||||||| | ||| |||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1 ATGATGAACAATGGCTGCGATGAAGTCTCTCCGCGGTCAGAGATCGCTCTTCTGGGTAGT 60
Query 81 GTTGAAACCATGTTGGAGAAAATCTACGAGAAACACAAGCAGCATCGTCCGATAAAAGTG 140
|||||||| ||||||||||||||||||||||||||||| || | || |||||||| |||
Sbjct 61 GTTGAAACAATGTTGGAGAAAATCTACGAGAAACACAATCATCGTCTTCCGATAAGTGTG 120
Query 141 GAGACAAGGCGGAGACTTTCTTCGATTTCTGAGGAATTGGCTTTGGAAACACTCAGGAAA 200
||||||||||| | |||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 121 GAGACAAGGCGAAAACTTTCTTCGATTTCTGAGGAATTGGCTCTGGAAACACTTAGGAAA 180
Query 201 GTTTTCAACATGCCGTATGTGAAGACCCTCGATGGGATAATCATGTATTTTGTTAACAAT 260
|||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||| |
Sbjct 181 GTTTTCAATAAGCCGTATTTGAAGACCCTCGATGGGTTAATCATGTATTTTGTTAA-AGG 239
Query 261 G-CGGCCACTGTTGATGG--CT------CT---T-----CG-GT-T-CAGT---G--TCC 295
| | | |||||||||||| || || | || || | |||| | |||
Sbjct 240 GACAGTCACTGTTGATGGCTCTCCACGCCTGAGTCCCGGCGAGTCTCCAGTACAGTCTCC 299
Query 296 TAGAACTCCTGGGaaaaaaaGTTGCA-GGCTTTTTCAAGATGTGTCTATTGATTTGGAAA 354
||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||||||||
Sbjct 300 TAGAACTCCTGCCAAAAAAAGTTGCAGGGC-TTCTCAAGATGTGTCTCTTGATTTGGAAA 358
Query 355 CTCCATCTCCTAAGTTCTTGAGAAGAGAAGAAAATGGAGGATCATCTAAGCACATTCCTC 414
|||| |||||||||||| ||| ||||||||||||||| || ||||||| |||||||||
Sbjct 359 CTCCCTCTCCTAAGTTCATGAAAAGAGAAGAAAATGGTGG---ATCTAAGTACATTCCTC 415
Query 415 CGCTATTAGCTCTT-GGTGAACTTGAATTCAACAAGGCTTTTCTGTTGCTTAGCTATATT 473
|||| |||||| || ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 416 CGCTTTTAGCT-TTGGGTGAACTTGAATTCAAGAAGGCGTTTCTGTTGCTTAGCTATATT 474
Query 474 GGAGGGGAATCCCTGGTTGAGGAGGTTATATCTGGTGATGAGATCAGAAAATGGAAGGAT 533
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 475 GGAGGGGAATCCCTTGTTGAGGAGGTTATATCTGGTGATCAGATCAGAAAATGGAAGGAT 534
Query 534 TTGCCAATGGTTGAATATGAAGCAGAGGTTTGGAACCGGTTGGGACAGCGTTATTG-TCC 592
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 535 TTGCCAATGGTTTCATATGAAGCAGCGGTTTGGAACCGGTTGGGACAGCGTTATTGTTCC 594
Query 593 CCCAAAGGAGCGAAGAAGGTCACTTGAAGGGGATAGTGGGAAGACTCATTACTATCAATG 652
||| ||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||
Sbjct 595 CCC-AAGGAGCGAAGAAGGCCACTTGAAGGGGATAGTGGGATGACCCATTACTATCAATG 653
Query 653 TCATGTTGCTCCCGATGGTAGTTACAAATTCAAGGGTTATCTTCTGGAGGACACTGGAAC 712
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 654 TCATGTTGCTACCGATGGTAGTTACAAATTCAAGGGTCATCTTCTGGAGAACACTGGAAC 713
Query 713 ACACCTGCACAAGGTTTTGGGTGATGATAACGTTTTAACCGTCAAATTCGATAAAGTGTT 772
|||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||
Sbjct 714 ACACCTGCACAAGGTTTTGGGTGATGATAACGTTCTAACTGTCAAATTTGATAAAGTGTT 773
Query 773 AGGCGAGGAAACCTATTGTAATGACCTTTACTCTACATACAAAGGGATTGCTAAGAATGG 832
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AGGCGTGGAAACCTATTGTAATGACCTTTACTCTACATACAAAGGGATTGCTAAGAATGG 833
Query 833 TATCATGGTTGGGTTACGCCGTTATCGATTTTTTG 867
|||||||||||||||||||||||||||||||||||
Sbjct 834 TATCATGGTTGGGTTACGCCGTTATCGATTTTTTG 868
> AT2G19920.1 | Symbols: | RNA-dependent RNA polymerase family
protein | chr2:8602222-8606887 REVERSE LENGTH=2784
Length=2784
Score = 756 bits (409), Expect = 0.0
Identities = 752/914 (82%), Gaps = 38/914 (4%)
Strand=Plus/Plus
Query 1769 AGTTTACAGGAATCCTGGATTACATTTTGGAGATATACATGTGCTTAAGGCTACATATGT 1828
||||||||||||||||||| ||||||||||||| |||||| | || ||||||||||||||
Sbjct 1890 AGTTTACAGGAATCCTGGACTACATTTTGGAGACATACATATTCTAAAGGCTACATATGT 1949
Query 1829 TAAGGCCTTAGAAGACTATGTCGGAAATTCCAAGTATGCTGTGTTCTTCCCTCAGAAAGG 1888
||| |||| ||| | ||||| |||||||||||||||| ||||||||||||||| |||||
Sbjct 1950 TAAATCCTTGGAACAGTATGTTGGAAATTCCAAGTATGGTGTGTTCTTCCCTCAAAAAGG 2009
Query 1889 TCCGAGATCCTTGGGTGATGAGATTGCAGGTGGTGACTTTGATGGCGATATGTATTTCAT 1948
||| ||||| ||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 2010 TCCAAGATCTTTGGGAGACGAAATTGCAGGTGGTGACTTTGATGGCGATATGTATTTCAT 2069
Query 1949 ATCCAGAAATCCCAAGCTACTGGAATACTTCAAGCCAAGTGAACCATGGGTGAGTTCTTC 2008
||||||||||||||||||||| || ||| ||||||||||||||| ||||||||||||||
Sbjct 2070 ATCCAGAAATCCCAAGCTACTTGAGCACTACAAGCCAAGTGAACCGTGGGTGAGTTCTTC 2129
Query 2009 TAAACCTAGTAAAATTTACTCTGGAAGA-AAGCCAAGTGAACTATCAGAAGAAGAGTTGG 2067
| || ||||||||||||| |||| ||| || ||||||||||| ||| ||| ||||||
Sbjct 2130 TCCACGTAGTAAAATTTACACTGGTAGACAA-CCAAGTGAACTTTCACCCGAACAGTTGG 2188
Query 2068 AAGAAGAGCTTTTCAAAATGTTCTTAAATG-CAAGATTTCGTCCGAGCG-ACGTTATAGG 2125
||||||||||||||||||| |||||||| | || ||||| |||| ||| | ||||||||
Sbjct 2189 AAGAAGAGCTTTTCAAAATCTTCTTAAA-GACAGGATTTAGTCCCAGCTCA-GTTATAGG 2246
Query 2126 G-ATGGCTGCAGATTGCTGGCTAGGAATAATGGACCC-TCTCCTCACCTTAGGAGCTGAG 2183
| |||||||||| ||||||||| ||||||||||| | ||||||||||||||| ||||
Sbjct 2247 ACA-GGCTGCAGATAGCTGGCTAGCAATAATGGACCGGT-TCCTCACCTTAGGAGATGAG 2304
Query 2184 AGTGCGAAGGAAAAATATGAAAGGAACAAGAATATTCTTAAGTTGATTGATATATATTAT 2243
| || ||||||||| ||||| ||| ||||| || || ||||||| ||||||||| |||
Sbjct 2305 AATGTTAAGGAAAAAGCTGAAATGAAGAAGAAAATGCTAAAGTTGACTGATATATACTAT 2364
Query 2244 GATGCTCTTGATGCACCAAAAAAGGGGGCTAAGGTCGATCTCCCACCCGACCTAGAGATC 2303
|||||| ||||||||||||||| |||| || ||||| ||||||| ||| || || ||
Sbjct 2365 GATGCTATTGATGCACCAAAAACGGGGACTGAGGTCAATCTCCCGTTAGACGTAAAGGTC 2424
Query 2304 AAAAATTTTCCACATTACATGGAGCGTGACCCTAAGAGAGATTTCAGGTCGACTTCTATT 2363
| |||||||||||| |||||| | || ||| | | ||| || ||| |||||||||
Sbjct 2425 GATCTTTTTCCACATTATATGGAGAG-GAA--TAA-A-ACATT-CAAGTCCACTTCTATT 2478
Query 2364 CTTGGATTAATCTTTGACACTGTAGATTCCCAGAATGCAGAGGA-ACCCCCACCATCTGA 2422
||||||||||||||||||||||| |||| || ||||||||||| ||| | ||||||||
Sbjct 2479 CTTGGATTAATCTTTGACACTGTGGATTTTCATAATGCAGAGGACACCAC-ACCATCTGG 2537
Query 2423 AATCAGTAAACT-CTGGTATTTTGAAGATGAACCGGTCCCTAAGTCTCACATGGATAAAT 2481
|||||||||||| | | | |||||||||||| |||||| || ||| | ||||||| ||||
Sbjct 2538 AATCAGTAAACTTCAG-TGTTTTGAAGATGAGCCGGTCTCTGAGTTTGACATGGAGAAAT 2596
Query 2482 TTACA-TCCTGGTACGAGAATTACAGAGCTGAAATGTCCCAAGCGATGGAGGAAACTGAT 2540
|| | || ||| || || |||||||| || |||| ||||||||| | | | |||
Sbjct 2597 GTAAACTC-TGGCACAAGGATTACAGAAAGGAGATGTGTCAAGCGATG-A--ACTCAGAT 2652
Query 2541 AAGGTTAAGAAGAAGCAATTAGCCAATGAAGTTATCCAGAGATACAAGCAGGATTTCTAT 2600
| | || || | | | |||||||||||||||| |||||||||||| |||||
Sbjct 2653 GA--T---GATGATTCC-T--GT-AATGAAGTTATCCAGAAATACAAGCAGGAGTTCTAC 2703
Query 2601 GGCGCTGCAAGGTTTGAAGACAGCAACAAAAGTCTGGAAGAACTCTACCCCCAAG-CC-T 2658
| |||||| ||||| |||| ||||| |||| ||| |||||||||||||| ||| || |
Sbjct 2704 AGTGCTGCAGGGTTTAAAGAAAGCAAGAAAATTCTAGAAGAACTCTACCCA-AAGGCCCT 2762
Query 2659 TGGCACTCTACAAC 2672
|| |||| ||||||
Sbjct 2763 TG-CACTTTACAAC 2775
Score = 737 bits (399), Expect = 0.0
Identities = 724/870 (83%), Gaps = 66/870 (8%)
Strand=Plus/Plus
Query 34 GCAGCGATGAA-GTTTCTCCGCGGACAGAGATCGCTCTTCTGGGTAGTGTTGAAACCATG 92
|||||||| || |||| | || || |||| || ||||||||||||||||||||||| |||
Sbjct 29 GCAGCGATCAAGGTTT-TTCGTGGTCAGAAATTGCTCTTCTGGGTAGTGTTGAAACAATG 87
Query 93 TTGGAGAAAATCTACGAGAAACACAAGCAGCATCGTCCGATAAAAGTGGAGACAAGGCGG 152
||||||||| |||||| ||||||||| || |||| ||||||||||||||||||||| |||
Sbjct 88 TTGGAGAAAGTCTACGGGAAACACAATCATCATCCTCCGATAAAAGTGGAGACAAGACGG 147
Query 153 AGACTTTCTTCGATTTCTGAGGAATTGGCTTTGGAAACACTCAGGAAAGTTTTCAACATG 212
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 148 AGACTTTCTTCGATTTCTGAGGAATTGGCTTTGGAAACACTCAGGAAAGTTCTCAATATG 207
Query 213 CCGTATGTGAAGACCCTCGATGGGATAATCATGTATTTTGTTAACAATGCGGCCACTGTT 272
||| |||||||||||||||||||||||||||| |||||| ||||| |||||| ||| |||
Sbjct 208 CCGAATGTGAAGACCCTCGATGGGATAATCATATATTTTCTTAACGATGCGGTCACCGTT 267
Query 273 GATGGCTCT--TCG---GT--TC-----AGT-----GT-C-----C-TAGAACTCCTGGG 308
||||||||| ||| || || ||| || | | ||||||||| |||
Sbjct 268 GATGGCTCTCCTCGCCTGTGGTCTGGCGAGTCTCCAGTACAGTTTCCTAGAACTCCCGGG 327
Query 309 aaaaaaaGTTGCAGG-CTTTTTCAAG-AT-G-TGTCTATTGATT-TGGAA-ACTCCATCT 362
||||||||||||||| ||| | |||| | | ||||| ||||| || || | ||| |||
Sbjct 328 AAAAAAAGTTGCAGGGCTTCT-CAAGCAGAGGTGTCTCTTGATCGTG-AAGA-TCCGTCT 384
Query 363 CCTAAGTTCTTGAGAAGAGAAGAAAATGGAGGATCATCTAAGCACATTCCTCCGCTATTA 422
||||||||||||||| |||| |||||||||| | ||||||||||||| ||| ||||||
Sbjct 385 CCTAAGTTCTTGAGAGGAGATGAAAATGGAG-A--ATCTAAGCACATTTCTCTTCTATTA 441
Query 423 GCTCTTGG-TGAACTTGAATTCAACAAGGC-TTTTCTGTTGCTTAGCTATATTGGAGGGG 480
||| |||| ||||||||||||||| ||||| |||| ||||||||| |||| ||||||||
Sbjct 442 GCT-TTGGGTGAACTTGAATTCAAGAAGGCGTTTT-TGTTGCTTACCTATCTTGGAGGGA 499
Query 481 AATCCCTGGTTGAGGAGGTTATATCTGGTGATGAGATCAGAAAATGGAAGGATTTGCCAA 540
|||| |||| ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 500 AATCTCTGGGTGAGG---TTATATCTGGTGATGAGATCAGACAATGGAAGGATTTGCCAA 556
Query 541 TGGTTGAATATGAAGCAGAGGTTTGGAACCGGTTGGGACAGCGTTATTGTCCCCCAAAGG 600
|||||| ||||||| |||| || |||| | || || | || ||| |
Sbjct 557 TGGTTGCATATGAA--AGAGCAGTGT----GGTTC--A-AG--TTGG-G-CCA--AAACG 601
Query 601 AGCGAA-GAAGGTCA-CTTGAAGGGGATAGTGGGAAGACTCATTACTATCAATGTCATGT 658
|| ||| ||| | || |||||| |||||| |||||||||||||||||||||||||||||
Sbjct 602 AG-GAAAGAATG-CAGCTTGAATCGGATAGCGGGAAGACTCATTACTATCAATGTCATGT 659
Query 659 TGCTCCCGATGGTAGTTACAAATTCAAGGGTTATCTTCTGGAGGACACTGGAACACACCT 718
||||||||||||||| |||| ||| ||||||||| |||||||| ||||||||||||||||
Sbjct 660 TGCTCCCGATGGTAGCTACAGATTAAAGGGTTATTTTCTGGAGAACACTGGAACACACCT 719
Query 719 GCACAAGGTTTTGGGTGATGATAACGTTTTAACCGTCAAATTCGATAAAGTGTTAG-GCG 777
|||||||||||||||||||||||| ||||||||||| | ||||||| || | | | |
Sbjct 720 GCACAAGGTTTTGGGTGATGATAATGTTTTAACCGTTAGATTCGATCAATTACCAAAG-G 778
Query 778 AGGAAACCTATTGTAATGACCTTTACTCTACATACAAAGGGATTGCTAAGAATGGTATCA 837
|| ||| || ||| | ||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 779 AGTCAACATACTGTGACAACCCTTACTCTAAATACAAAGAGATTGCTAAGAATGGTATCA 838
Query 838 TGGTTGGGTTACGCCGTTATCGATTTTTTG 867
||||||| ||||| ||||||| ||||||||
Sbjct 839 TGGTTGGTTTACGTCGTTATCAATTTTTTG 868
Score = 719 bits (389), Expect = 0.0
Identities = 682/816 (84%), Gaps = 49/816 (6%)
Strand=Plus/Plus
Query 966 TTCAAAGATGGAGGGAAAGAAGAGAAGAAGAA-AGACGCTGCTACAAAGGGAGTGAAATG 1024
||||||||||||||||||| |||||| ||||| ||| | |||||||| |||||||||
Sbjct 871 TTCAAAGATGGAGGGAAAGCAGAGAAAAAGAAGAGA-AATTCTACAAAGCAAGTGAAATG 929
Query 1025 CTACTTTATACGCACAGACTCGACAGCTTCAAATGATATGCGA-AACCCCTATAT-CTTC 1082
|||||| |||||||| | || ||||| || | ||||||| || || || ||||| |||
Sbjct 930 CTACTTCATACGCACGGGTTCTACAGCATCCAGTGATATG-GAGAATCCTTATATCCTT- 987
Query 1083 TCCGGAAAGTCAATGCATGAAGCGCGTATGCATTTTATGCATGTGAATACTTTGTCATCT 1142
||||| | |||||| |||||||| ||||||||||||||||||||| |||| ||| | ||
Sbjct 988 TCCGGGATGTCAATTCATGAAGCTCGTATGCATTTTATGCATGTGCATACATTGCCTTC- 1046
Query 1143 TTGC-CCAACTATATGGCAAGGTTTTCTTTAATTCTGTCAAAGACTAAAACGCTCGAAGT 1201
| | |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct 1047 TCCCGCCAACTATATGGCAAGGTTTTCTTTAATTCTGTCAAAGACAAAAAAGCTTGAAGT 1106
Query 1202 TGACATGACTGGGATTACCTTCGA-GCAAATTGATGATATACACTGCCATGATC-AAGAT 1259
||||||||||| ||||||| || | |||||| |||||||||||||||||||||| ||| |
Sbjct 1107 TGACATGACTGAGATTACCGTC-ATGCAAATCGATGATATACACTGCCATGATCAAAG-T 1164
Query 1260 AATAAGGATGTTCTTGACAAGAATGGGAAACCTTGTATACATTCAGATGGAACTGGCTAC 1319
||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||||| |||
Sbjct 1165 AATAATGATGTTCTTGATAAGAATGGGAAACCTCGTATACACTCAGATGGAACTGGATAC 1224
Query 1320 ATCTCTGAGGACCTTGCTCGAATGTGTCCAGTT-AATATTTTTAAAGGGAAATCTATGAG 1378
|||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||
Sbjct 1225 ATCTCTGAGGACCTTGCTCGGATGTGTCCA-TTAAATATTTTTAAAGGGAAATCTATGAG 1283
Query 1379 AAGTAACAATATTCAGAGTAAGATTCCAAATATTGAAGGACAGGGACCATGTGGCCAAGA 1438
|||| | | || | | ||| | | | || | ||| |||| ||||||
Sbjct 1284 AAGT----A-A--CA-A-T---ATT-C----A--G--GG--A---ACC-TGTGTCCAAGA 1316
Query 1439 GCCGCCTCTGCTGATCCAGTTTCGGATGTTTCATAATGGCTATGCTGTTAAGGGAACTTT 1498
|||||||||||||||||| ||||||||||| || |||||| |||||||||||||| |||
Sbjct 1317 GCCGCCTCTGCTGATCCAAATTCGGATGTTTAATGATGGCTCTGCTGTTAAGGGAA-TTT 1375
Query 1499 T-CTCA-CAAACAAGAAACTTCCTCCTTGGACTGTCCAGGTTCGGCCTTCTATGATCAAG 1556
| || | ||||||||| |||||||| ||| ||||||||||| |||||||||||||||
Sbjct 1376 TCCT-ATTAAACAAGAACCTTCCTCCACAGACCGTCCAGGTTCGACCTTCTATGATCAAG 1434
Query 1557 GTGAATGAAGATCAAACCATGTCAAATTTTAGTACCTTTAACTCCCTGGAGGTAGTCACT 1616
||| || ||||| ||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct 1435 GTGTATAAAGATAAAAATTTGTCAAATTTTAGCACGTTTAACTCCCTGGAGGTAGTCACT 1494
Query 1617 ACAAGTAATCCACCAAGAA-ATGCGAGGCTATC-AAGAAATTTGGTCGCTCTGCTTAGTT 1674
|||||||||||||||| || | |||| |||||| ||||| ||| ||||| ||||| || |
Sbjct 1495 ACAAGTAATCCACCAAAAAGA-GCGAAGCTATCGAAGAA-TTTAGTCGCGCTGCTGAGCT 1552
Query 1675 ATGGAGGAGTCCCTAATGACTTCTTTTTGAATATACTGCGGAACACATTGGAAGAGTCCA 1734
|||||||||| || ||||| ||||||||| ||||| ||| ||||| |||||| || |
Sbjct 1553 ATGGAGGAGTGCCAAATGATTTCTTTTTGGATATATTGCTCAACACGTTGGAAAAGAAGA 1612
Query 1735 AAACCATATTCTACAGCGAACGTGCTGCGTTTAAAG 1770
|||||||||||| || | |||||| ||| |||||
Sbjct 1613 AAACCATATTCTTCAAAGTACGTGCAGCGGGTAAAG 1648
> AT2G19930.1 | Symbols: | RNA-dependent RNA polymerase family
protein | chr2:8607340-8612441 REVERSE LENGTH=3127
Length=3127
Score = 466 bits (252), Expect = 5e-130
Identities = 376/436 (86%), Gaps = 8/436 (2%)
Strand=Plus/Plus
Query 963 GTTTTCAAAGATGGAGGGAAAGAAGAGAAGAAGAAAGACGC-TGCTACAAAGGGAGTGAA 1021
||||||||||||||||| ||||| || ||||||||||| | | |||||||| ||||||
Sbjct 856 GTTTTCAAAGATGGAGGAAAAGAGGAAAAGAAGAAAGA-TCTTTCTACAAAGAAAGTGAA 914
Query 1022 ATGCTACTTTATACGCACAGACTCGACAGCTTCAAATGATATGCGAAACCCCTATATCTT 1081
|||||||||||||||||| ||||| ||||||| ||||||||| ||| |||||||| ||
Sbjct 915 ATGCTACTTTATACGCACGGACTCAACAGCTTTTTATGATATGCAAAATCCCTATATTTT 974
Query 1082 CTCCGGAAAGTCAATGCATGAAGCGCGTATGCATTTTATGCATGTGAATACTTTG--TCA 1139
||||||||||||| ||||||| ||||||||||||||||| ||| || | | ||
Sbjct 975 AACCGGAAAGTCAATTTATGAAGCTCGTATGCATTTTATGCACGTGCAT-C-GAGCACCA 1032
Query 1140 TCTTTGCCCAACTATATGGCAAGGTTTTCTTTAATTCTGTCAAAGACTAAAACGCTCGAA 1199
||||| | || ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1033 ACTTTGGCGAATTATATGGCAAGGTTTTCCTTAATTCTGTCAAAGACTAAAACGCTTGAA 1092
Query 1200 GTTGACATGACTGGGATTACCTTCGAGCAAATTGATGATATACACTGCCATGATCAAGAT 1259
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1093 GTTGACATGACTGGGATTACCTTTGATCAAATTGATGATATACACTGCCATGATCAAGAT 1152
Query 1260 AATAAGGATGTTCTTGACAAGAATGGGAAACCTTGTATACATTCAGATGGAACTGGCTAC 1319
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1153 GGGAAAGATGTTCTTGACAAGAACAAAAAACCTTGCATACATTCAGATGGAACTGGCTAC 1212
Query 1320 ATCTCTGAGGACCTTGCTCGAATGTGTCCAGTTAATATTTTTAAAGGGAAATCTATGAGA 1379
|||||||||||||| ||||| |||||||| | ||||| ||||||||||||| | | |||
Sbjct 1213 ATCTCTGAGGACCTGGCTCGGATGTGTCCCCTAAATATATTTAAAGGGAAATGTCTCAGA 1272
Query 1380 AGTAACAA-TATTCAG 1394
||| | || |||||||
Sbjct 1273 AGTGA-AAGTATTCAG 1287
Score = 339 bits (183), Expect = 1e-91
Identities = 457/581 (79%), Gaps = 51/581 (9%)
Strand=Plus/Plus
Query 320 CAGGCTTTTTCAAG-A-TG-TGTCTATTGATT-TGGAAACTCCATCTCCTAAGTTC-TTG 374
|||| || |||||| | | ||||| |||||| | || |||| ||||||||| || |||
Sbjct 294 CAGGGTTCTTCAAGAAGAGATGTCTGTTGATTCT-GATGCTCCTTCTCCTAAG-TCTTTG 351
Query 375 AGAAGAGAAGA-AAATGGAGGATCATCTAAGCACATTCCTCC-GCTATTAGCTCTT-GGT 431
| ||| ||||| ||| |||||||| ||| ||||||||| || ||| ||||| || |||
Sbjct 352 AAAAGTGAAGACAAA-GGAGGATC-TCT--GCACATTCC-CCAGCTGGTAGCT-TTGGGT 405
Query 432 GAACTTGAATTCAACAAGGCT-TTTCTGTTGCTTAGCTATATTGGAGGGGAATCCCTGGT 490
||||||||||| || |||| | ||| |||| |||||||||||| |||| || | | |
Sbjct 406 GAACTTGAATTTAAGAAGG-TGTTTTTGTTACTTAGCTATATTCCAGGGCAA--CAT-G- 460
Query 491 TGAGG--AGGTTATATCTGGTGATGAGATCAGAAAATGGAAGGATTTGCCAATGGTTGAA 548
|| || |||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||
Sbjct 461 TG-GGCCAGGTTATAACTGCTGATGAGATTAGACTGTGGAAAGATTTGCCAATGGTTGAA 519
Query 549 TATGAAGCAGAGGTTTGGAACCGGTTGGGACAGCGTTATTGTCCCCCAAAGGAGCGAAGA 608
|||||||||| ||||||| |||| ||||| | || ||||||||||| |||||| ||||||
Sbjct 520 TATGAAGCAGCGGTTTGGGACCGCTTGGGCCGGCATTATTGTCCCCAAAAGGACCGAAGA 579
Query 609 AGGTCACTTGAAGGGGATAGTGGGAAGACTCATTACTATCAATGTCATGTTGCTCCCGAT 668
| || | || ||||||| |||||||| ||||||||||| ||| ||||||||||| ||
Sbjct 580 ATGTTGC---AATGGGATAGCGGGAAGACCCATTACTATCAGTGTAATGTTGCTCCCAAT 636
Query 669 GGTAGTTACAAATTCAAGG--------G-T-T--A------TCTTCTGGAGGACACTGGA 710
||||| |||| |||||||| | | | | |||||| || ||||||||
Sbjct 637 GGTAGCTACACATTCAAGGTTCTTTCAGCTCTTCAAGGCCCTCTTCTTGAACACACTGGA 696
Query 711 ACACACCTGCACAAGGTTTTGGGTGATGATAACGTTTTAACCGTCAAATTCGATAAAGTG 770
|||||| |||||||||| |||||||||||||| ||||||||||||||||||| | ||
Sbjct 697 ACACACTTGCACAAGGTCTTGGGTGATGATAATGTTTTAACCGTCAAATTCGCGGATGTC 756
Query 771 TTAGGCGAGG--A--AACCTATTGTAATGACCTTTACTCTACATACAAAGGGATTGCTAA 826
|| || | ||| ||| | | ||||| ||||| |||||||||||||||||| ||
Sbjct 757 C-AGAAAAGTTCATCAACATATAGCATTGACCATTACTTTACATACAAAGGGATTGCCAA 815
Query 827 GAATGGTATCATGGTTGGGTTACGCCGTTATCGATTTTTTG 867
||| ||||||||| |||| ||||| ||||||| ||||||||
Sbjct 816 GAACGGTATCATGATTGGTTTACGTCGTTATCAATTTTTTG 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141370445374
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5