BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg931400 Length=2845 Score E Sequences producing significant alignments: (Bits) Value AT2G19910.1 | Symbols: | RNA-dependent RNA polymerase family p... 1615 0.0 AT2G19920.1 | Symbols: | RNA-dependent RNA polymerase family p... 756 0.0 AT2G19930.1 | Symbols: | RNA-dependent RNA polymerase family p... 466 5e-130 > AT2G19910.1 | Symbols: | RNA-dependent RNA polymerase family protein | chr2:8595820-8600757 REVERSE LENGTH=2979 Length=2979 Score = 1615 bits (874), Expect = 0.0 Identities = 998/1059 (94%), Gaps = 4/1059 (0%) Strand=Plus/Plus Query 1769 AGTTTACAGGAATCCTGGATTACATTTTGGAGATATACATGTGCTTAAGGCTACATATGT 1828 ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| Sbjct 1923 AGTTTACAGAAATCCTGGATTACATTTTGGAGACATACATGTACTTAAGGCTACCTATGT 1982 Query 1829 TAAGGCCTTAGAAGACTATGTCGGAAATTCCAAGTATGCTGTGTTCTTCCCTCAGAAAGG 1888 ||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| Sbjct 1983 TAAGGCCTTAGAAGACTATGTTGGAAATGCCAAGTTTGCTGTGTTCTTCCCTCAGAAAGG 2042 Query 1889 TCCGAGATCCTTGGGTGATGAGATTGCAGGTGGTGACTTTGATGGCGATATGTATTTCAT 1948 ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2043 TCCAAGATCCTTGGGCGATGAGATTGCTGGTGGTGACTTTGATGGCGATATGTATTTCAT 2102 Query 1949 ATCCAGAAATCCCAAGCTACTGGAATACTTCAAGCCAAGTGAACCATGGGTGAGTTCTTC 2008 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2103 ATCCAGAAATCCCAAGCTACTGGAACACTTCAAGCCAAGTGAACCATGGGTGAGTTCTTC 2162 Query 2009 TAAACCTAGTAAAATTTACTCTGGAAGAAAGCCAAGTGAACTATCAGAAGAAGAGTTGGA 2068 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2163 TAAACCTAGTAAAATTTACTGTGGAAGAAAGCCAAGTGAACTATCAGAAGAAGAGTTGGA 2222 Query 2069 AGAAGAGCTTTTCAAAATGTTCTTAAATGCAAGATTTCGTCCGAGCGACGTTATAGGGAT 2128 ||||||||| ||||||||||||||||| ||||||||| || ||| |||||||||||||| Sbjct 2223 AGAAGAGCTATTCAAAATGTTCTTAAAAGCAAGATTTTGTAAGAGAGACGTTATAGGGAT 2282 Query 2129 GGCTGCAGATTGCTGGCTAGGAATAATGGACCCTCTCCTCACCTTAGGAGCTGAGAGTGC 2188 |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 2283 GGCTGCAGATTGCTGGCTAGGAATAATGGACCCTTTCCTCACCTTAGGAGATGAGAGTGC 2342 Query 2189 GAAGGAAAAATATGAAAGGAACAAGAATATTCTTAAGTTGATTGATATATATTATGATGC 2248 |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 2343 TAAGGAAAAATATGAAAGGAAGAAGAATATTCTTAAGTTGATTGATATATACTATGATGC 2402 Query 2249 TCTTGATGCACCAAAAAAGGGGGCTAAGGTCGATCTCCCACCCGACCTAGAGATCAAAAA 2308 |||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| Sbjct 2403 TCTTGATGCACCAAAAAAGGGGGCTAAGGTTGATCTCCCGCCCGATCTAGAGATCAAAAA 2462 Query 2309 TTTTCCACATTACATGGAGCGTGACCCTAAGAGAGATTTCAGGTCGACTTCTATTCTTGG 2368 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2463 TTTTCCACATTACATGGAGCGTGACCCTAAGAGAGATTTCAGGTCCACTTCTATTCTTGG 2522 Query 2369 ATTAATCTTTGACACTGTAGATTCCCAGAATGCAGAGGAACCCCCACCATCTGAAATCAG 2428 |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| Sbjct 2523 ATTAATCTTTGACACTGTGGATTCTCATAATGCAGAGGAACCCCCACCATCTGAAATCAG 2582 Query 2429 TAAACTCTGGTATTTTGAAGATGAACCGGTCCCTAAGTCTCACATGGATAAATTTACATC 2488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2583 TAAACTCTGGTATTTTGAAGATGAACCGGTCCCTAAGTCTCACATGGATAAATTTACATC 2642 Query 2489 CTGGTACGAGAATTACAGA-GCTGAAATGTCCCAAGCGATGGA-GGAAACTGATAAGGTT 2546 |||||||||||||||| || | ||||||||||||||||||| | |||||||||||||||| Sbjct 2643 CTGGTACGAGAATTACCGAAG-TGAAATGTCCCAAGCGATG-ATGGAAACTGATAAGGTT 2700 Query 2547 AAGAAGAAGCAATTAGCCAATGAAGTTATCCAGAGATACAAGCAGGATTTCTATGGCGCT 2606 |||| ||| |||||| ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2701 AAGAGGAATCAATTAACCAATGAAGTTATCCAGAGGTACAAGCAGGATTTCTATGGCGCT 2760 Query 2607 GCAAGGTTTGAAGACAGCAACAAAAGTCTGGAAGAACTCTACCCCCAAGCCTTGGCACTC 2666 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2761 GCAGGGTTTGAAGACAGCAATAAAAGTCTGGAAGAACTCTACCCCCAAGCCTTGGCACTC 2820 Query 2667 TACAACATCGTTTATGATTTTGCCTTTCCCGAAGGTGTTTCGAAATGCGCGTTTGTCTGG 2726 |||||| ||||||| |||| |||| ||| ||||||||| ||||||| | |||| |||| Sbjct 2821 TACAACGTCGTTTACGATTATGCCATTCAGGAAGGTGTTGCGAAATGTACATTTGCCTGG 2880 Query 2727 AAGGTTGCAGGACCGGTCCTATGCAGATTTTACCTTAAGAAAACGCAGGAGAAATTAGTA 2786 || ||||||||||||||||| |||| ||||||||||||||||||| |||| |||| |||| Sbjct 2881 AATGTTGCAGGACCGGTCCTGTGCAAATTTTACCTTAAGAAAACGAAGGATAAATCAGTA 2940 Query 2787 GTGGCTTCAACCTCTGTGCTTAAAAAGATTTGGGGTTGA 2825 ||||||||||| ||||||||||||||| ||| ||||||| Sbjct 2941 GTGGCTTCAACGTCTGTGCTTAAAAAGCTTTTGGGTTGA 2979 Score = 1288 bits (697), Expect = 0.0 Identities = 772/809 (95%), Gaps = 2/809 (0%) Strand=Plus/Plus Query 963 GTTTTCAAAGATGGAGGGAAAGAAGAGAAGAAGAAAGACGCTGCTACAAAGGGAGTGAAA 1022 |||||||||||||||||||||||||||||||||||||| | | ||||||||||||| ||| Sbjct 868 GTTTTCAAAGATGGAGGGAAAGAAGAGAAGAAGAAAGATGTTTCTACAAAGGGAGTTAAA 927 Query 1023 TGCTACTTTATACGCACAGACTCGACAGCTTCAAATGATATGCGAAACCCCTATATCTTC 1082 |||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| Sbjct 928 TGCTACTTTATACGCACAGACTCGACAGCTTCAATTGATATGCAAAATCCCTATATCTTC 987 Query 1083 TCCGGAAAGTCAATGCATGAAGCGCGTATGCATTTTATGCATGTGAATACTTTGTCATCT 1142 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 988 GCCGGAAAGTCAATGCATGAAGCACGTATGCATTTTATGCATGTGAATACTTTGTCATCT 1047 Query 1143 TTGCCCAACTATATGGCAAGGTTTTCTTTAATTCTGTCAAAGACTAAAACGCTCGAAGTT 1202 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1048 TTGCCCAACTATATGTCAAGGTTTTCTTTAATTCTGTCAAAGACTAAAACGCTCGAAGTT 1107 Query 1203 GACATGACTGGGATTACCTTCGAGCAAATTGATGATATACACTGCCATGATCAAGATAAT 1262 ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| || Sbjct 1108 GACATGACTGGAATTACCTTTGAGCAAATCGATGATATACACTGCCATGATCAAGATGAT 1167 Query 1263 AAGGATGTTCTTGACAAGAATGGGAAACCTTGTATACATTCAGATGGAACTGGCTACATC 1322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1168 AAGGATGTTCTTGACAAGAATGGGAAACCTTGTATACATTCAGATGGAACTGGCTACATC 1227 Query 1323 TCTGAGGACCTTGCTCGAATGTGTCCAGTTAATATTTTTAAAGGGAAATCTATGAGAAGT 1382 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1228 TCTGAGGACCTTGCTCGGATGTGTCCAGTTAATATTTTTAAAGGGAAATCTATGAGAAGT 1287 Query 1383 AACAATATTCAGAGTAAGA-TTCCAAATATTGAAGGACAGGGACCATGTGGCCAAGAGCC 1441 ||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| Sbjct 1288 AACAATATTCAGAGTAAGAATTT-AAATTTTGAAGGACAGGGACCATGTGGCCAAGAGCC 1346 Query 1442 GCCTCTGCTGATCCAGTTTCGGATGTTTCATAATGGCTATGCTGTTAAGGGAACTTTTCT 1501 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 1347 GCCTCTGCTGATCCAGTTTCGGATTTTTTATAATGGCTATGCTGTTAAGGGAACTTTTCT 1406 Query 1502 CACAAACAAGAAACTTCCTCCTTGGACTGTCCAGGTTCGGCCTTCTATGATCAAGGTGAA 1561 |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | Sbjct 1407 CACAAACAAGAAACTTCCTCCTCGGACTGTCCAGGTTCGACCTTCTATGATCAAGGTGTA 1466 Query 1562 TGAAGATCAAACCATGTCAAATTTTAGTACCTTTAACTCCCTGGAGGTAGTCACTACAAG 1621 |||||||| |||| |||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 1467 TGAAGATCGAACCTTGTCAAATCTTAGTACCTTTAACTCCTTGGAGGTAGTCACTACAAG 1526 Query 1622 TAATCCACCAAGAAATGCGAGGCTATCAAGAAATTTGGTCGCTCTGCTTAGTTATGGAGG 1681 ||||||||||||||| ||||||||||||||||||||||| || || |||||||||||||| Sbjct 1527 TAATCCACCAAGAAAGGCGAGGCTATCAAGAAATTTGGTGGCGCTACTTAGTTATGGAGG 1586 Query 1682 AGTCCCTAATGACTTCTTTTTGAATATACTGCGGAACACATTGGAAGAGTCCAAAACCAT 1741 |||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| Sbjct 1587 AGTCCCTAATGACTTCTTTTTGAATATATTGCGCAACACGCTGGAAGAGTCCAAAACCAT 1646 Query 1742 ATTCTACAGCGAACGTGCTGCGTTTAAAG 1770 ||||||||| ||||||||||||||||||| Sbjct 1647 ATTCTACAGTGAACGTGCTGCGTTTAAAG 1675 Score = 1101 bits (596), Expect = 0.0 Identities = 788/875 (90%), Gaps = 35/875 (4%) Strand=Plus/Plus Query 21 ATGATGAATTACGGCAGCGATGAAGTTTCTCCGCGGACAGAGATCGCTCTTCTGGGTAGT 80 |||||||| | ||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 1 ATGATGAACAATGGCTGCGATGAAGTCTCTCCGCGGTCAGAGATCGCTCTTCTGGGTAGT 60 Query 81 GTTGAAACCATGTTGGAGAAAATCTACGAGAAACACAAGCAGCATCGTCCGATAAAAGTG 140 |||||||| ||||||||||||||||||||||||||||| || | || |||||||| ||| Sbjct 61 GTTGAAACAATGTTGGAGAAAATCTACGAGAAACACAATCATCGTCTTCCGATAAGTGTG 120 Query 141 GAGACAAGGCGGAGACTTTCTTCGATTTCTGAGGAATTGGCTTTGGAAACACTCAGGAAA 200 ||||||||||| | |||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 121 GAGACAAGGCGAAAACTTTCTTCGATTTCTGAGGAATTGGCTCTGGAAACACTTAGGAAA 180 Query 201 GTTTTCAACATGCCGTATGTGAAGACCCTCGATGGGATAATCATGTATTTTGTTAACAAT 260 |||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||| | Sbjct 181 GTTTTCAATAAGCCGTATTTGAAGACCCTCGATGGGTTAATCATGTATTTTGTTAA-AGG 239 Query 261 G-CGGCCACTGTTGATGG--CT------CT---T-----CG-GT-T-CAGT---G--TCC 295 | | | |||||||||||| || || | || || | |||| | ||| Sbjct 240 GACAGTCACTGTTGATGGCTCTCCACGCCTGAGTCCCGGCGAGTCTCCAGTACAGTCTCC 299 Query 296 TAGAACTCCTGGGaaaaaaaGTTGCA-GGCTTTTTCAAGATGTGTCTATTGATTTGGAAA 354 ||||||||||| ||||||||||||| ||| || ||||||||||||| |||||||||||| Sbjct 300 TAGAACTCCTGCCAAAAAAAGTTGCAGGGC-TTCTCAAGATGTGTCTCTTGATTTGGAAA 358 Query 355 CTCCATCTCCTAAGTTCTTGAGAAGAGAAGAAAATGGAGGATCATCTAAGCACATTCCTC 414 |||| |||||||||||| ||| ||||||||||||||| || ||||||| ||||||||| Sbjct 359 CTCCCTCTCCTAAGTTCATGAAAAGAGAAGAAAATGGTGG---ATCTAAGTACATTCCTC 415 Query 415 CGCTATTAGCTCTT-GGTGAACTTGAATTCAACAAGGCTTTTCTGTTGCTTAGCTATATT 473 |||| |||||| || ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 416 CGCTTTTAGCT-TTGGGTGAACTTGAATTCAAGAAGGCGTTTCTGTTGCTTAGCTATATT 474 Query 474 GGAGGGGAATCCCTGGTTGAGGAGGTTATATCTGGTGATGAGATCAGAAAATGGAAGGAT 533 |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 475 GGAGGGGAATCCCTTGTTGAGGAGGTTATATCTGGTGATCAGATCAGAAAATGGAAGGAT 534 Query 534 TTGCCAATGGTTGAATATGAAGCAGAGGTTTGGAACCGGTTGGGACAGCGTTATTG-TCC 592 |||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 535 TTGCCAATGGTTTCATATGAAGCAGCGGTTTGGAACCGGTTGGGACAGCGTTATTGTTCC 594 Query 593 CCCAAAGGAGCGAAGAAGGTCACTTGAAGGGGATAGTGGGAAGACTCATTACTATCAATG 652 ||| ||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| Sbjct 595 CCC-AAGGAGCGAAGAAGGCCACTTGAAGGGGATAGTGGGATGACCCATTACTATCAATG 653 Query 653 TCATGTTGCTCCCGATGGTAGTTACAAATTCAAGGGTTATCTTCTGGAGGACACTGGAAC 712 |||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 654 TCATGTTGCTACCGATGGTAGTTACAAATTCAAGGGTCATCTTCTGGAGAACACTGGAAC 713 Query 713 ACACCTGCACAAGGTTTTGGGTGATGATAACGTTTTAACCGTCAAATTCGATAAAGTGTT 772 |||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| Sbjct 714 ACACCTGCACAAGGTTTTGGGTGATGATAACGTTCTAACTGTCAAATTTGATAAAGTGTT 773 Query 773 AGGCGAGGAAACCTATTGTAATGACCTTTACTCTACATACAAAGGGATTGCTAAGAATGG 832 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 774 AGGCGTGGAAACCTATTGTAATGACCTTTACTCTACATACAAAGGGATTGCTAAGAATGG 833 Query 833 TATCATGGTTGGGTTACGCCGTTATCGATTTTTTG 867 ||||||||||||||||||||||||||||||||||| Sbjct 834 TATCATGGTTGGGTTACGCCGTTATCGATTTTTTG 868 > AT2G19920.1 | Symbols: | RNA-dependent RNA polymerase family protein | chr2:8602222-8606887 REVERSE LENGTH=2784 Length=2784 Score = 756 bits (409), Expect = 0.0 Identities = 752/914 (82%), Gaps = 38/914 (4%) Strand=Plus/Plus Query 1769 AGTTTACAGGAATCCTGGATTACATTTTGGAGATATACATGTGCTTAAGGCTACATATGT 1828 ||||||||||||||||||| ||||||||||||| |||||| | || |||||||||||||| Sbjct 1890 AGTTTACAGGAATCCTGGACTACATTTTGGAGACATACATATTCTAAAGGCTACATATGT 1949 Query 1829 TAAGGCCTTAGAAGACTATGTCGGAAATTCCAAGTATGCTGTGTTCTTCCCTCAGAAAGG 1888 ||| |||| ||| | ||||| |||||||||||||||| ||||||||||||||| ||||| Sbjct 1950 TAAATCCTTGGAACAGTATGTTGGAAATTCCAAGTATGGTGTGTTCTTCCCTCAAAAAGG 2009 Query 1889 TCCGAGATCCTTGGGTGATGAGATTGCAGGTGGTGACTTTGATGGCGATATGTATTTCAT 1948 ||| ||||| ||||| || || |||||||||||||||||||||||||||||||||||||| Sbjct 2010 TCCAAGATCTTTGGGAGACGAAATTGCAGGTGGTGACTTTGATGGCGATATGTATTTCAT 2069 Query 1949 ATCCAGAAATCCCAAGCTACTGGAATACTTCAAGCCAAGTGAACCATGGGTGAGTTCTTC 2008 ||||||||||||||||||||| || ||| ||||||||||||||| |||||||||||||| Sbjct 2070 ATCCAGAAATCCCAAGCTACTTGAGCACTACAAGCCAAGTGAACCGTGGGTGAGTTCTTC 2129 Query 2009 TAAACCTAGTAAAATTTACTCTGGAAGA-AAGCCAAGTGAACTATCAGAAGAAGAGTTGG 2067 | || ||||||||||||| |||| ||| || ||||||||||| ||| ||| |||||| Sbjct 2130 TCCACGTAGTAAAATTTACACTGGTAGACAA-CCAAGTGAACTTTCACCCGAACAGTTGG 2188 Query 2068 AAGAAGAGCTTTTCAAAATGTTCTTAAATG-CAAGATTTCGTCCGAGCG-ACGTTATAGG 2125 ||||||||||||||||||| |||||||| | || ||||| |||| ||| | |||||||| Sbjct 2189 AAGAAGAGCTTTTCAAAATCTTCTTAAA-GACAGGATTTAGTCCCAGCTCA-GTTATAGG 2246 Query 2126 G-ATGGCTGCAGATTGCTGGCTAGGAATAATGGACCC-TCTCCTCACCTTAGGAGCTGAG 2183 | |||||||||| ||||||||| ||||||||||| | ||||||||||||||| |||| Sbjct 2247 ACA-GGCTGCAGATAGCTGGCTAGCAATAATGGACCGGT-TCCTCACCTTAGGAGATGAG 2304 Query 2184 AGTGCGAAGGAAAAATATGAAAGGAACAAGAATATTCTTAAGTTGATTGATATATATTAT 2243 | || ||||||||| ||||| ||| ||||| || || ||||||| ||||||||| ||| Sbjct 2305 AATGTTAAGGAAAAAGCTGAAATGAAGAAGAAAATGCTAAAGTTGACTGATATATACTAT 2364 Query 2244 GATGCTCTTGATGCACCAAAAAAGGGGGCTAAGGTCGATCTCCCACCCGACCTAGAGATC 2303 |||||| ||||||||||||||| |||| || ||||| ||||||| ||| || || || Sbjct 2365 GATGCTATTGATGCACCAAAAACGGGGACTGAGGTCAATCTCCCGTTAGACGTAAAGGTC 2424 Query 2304 AAAAATTTTCCACATTACATGGAGCGTGACCCTAAGAGAGATTTCAGGTCGACTTCTATT 2363 | |||||||||||| |||||| | || ||| | | ||| || ||| ||||||||| Sbjct 2425 GATCTTTTTCCACATTATATGGAGAG-GAA--TAA-A-ACATT-CAAGTCCACTTCTATT 2478 Query 2364 CTTGGATTAATCTTTGACACTGTAGATTCCCAGAATGCAGAGGA-ACCCCCACCATCTGA 2422 ||||||||||||||||||||||| |||| || ||||||||||| ||| | |||||||| Sbjct 2479 CTTGGATTAATCTTTGACACTGTGGATTTTCATAATGCAGAGGACACCAC-ACCATCTGG 2537 Query 2423 AATCAGTAAACT-CTGGTATTTTGAAGATGAACCGGTCCCTAAGTCTCACATGGATAAAT 2481 |||||||||||| | | | |||||||||||| |||||| || ||| | ||||||| |||| Sbjct 2538 AATCAGTAAACTTCAG-TGTTTTGAAGATGAGCCGGTCTCTGAGTTTGACATGGAGAAAT 2596 Query 2482 TTACA-TCCTGGTACGAGAATTACAGAGCTGAAATGTCCCAAGCGATGGAGGAAACTGAT 2540 || | || ||| || || |||||||| || |||| ||||||||| | | | ||| Sbjct 2597 GTAAACTC-TGGCACAAGGATTACAGAAAGGAGATGTGTCAAGCGATG-A--ACTCAGAT 2652 Query 2541 AAGGTTAAGAAGAAGCAATTAGCCAATGAAGTTATCCAGAGATACAAGCAGGATTTCTAT 2600 | | || || | | | |||||||||||||||| |||||||||||| ||||| Sbjct 2653 GA--T---GATGATTCC-T--GT-AATGAAGTTATCCAGAAATACAAGCAGGAGTTCTAC 2703 Query 2601 GGCGCTGCAAGGTTTGAAGACAGCAACAAAAGTCTGGAAGAACTCTACCCCCAAG-CC-T 2658 | |||||| ||||| |||| ||||| |||| ||| |||||||||||||| ||| || | Sbjct 2704 AGTGCTGCAGGGTTTAAAGAAAGCAAGAAAATTCTAGAAGAACTCTACCCA-AAGGCCCT 2762 Query 2659 TGGCACTCTACAAC 2672 || |||| |||||| Sbjct 2763 TG-CACTTTACAAC 2775 Score = 737 bits (399), Expect = 0.0 Identities = 724/870 (83%), Gaps = 66/870 (8%) Strand=Plus/Plus Query 34 GCAGCGATGAA-GTTTCTCCGCGGACAGAGATCGCTCTTCTGGGTAGTGTTGAAACCATG 92 |||||||| || |||| | || || |||| || ||||||||||||||||||||||| ||| Sbjct 29 GCAGCGATCAAGGTTT-TTCGTGGTCAGAAATTGCTCTTCTGGGTAGTGTTGAAACAATG 87 Query 93 TTGGAGAAAATCTACGAGAAACACAAGCAGCATCGTCCGATAAAAGTGGAGACAAGGCGG 152 ||||||||| |||||| ||||||||| || |||| ||||||||||||||||||||| ||| Sbjct 88 TTGGAGAAAGTCTACGGGAAACACAATCATCATCCTCCGATAAAAGTGGAGACAAGACGG 147 Query 153 AGACTTTCTTCGATTTCTGAGGAATTGGCTTTGGAAACACTCAGGAAAGTTTTCAACATG 212 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 148 AGACTTTCTTCGATTTCTGAGGAATTGGCTTTGGAAACACTCAGGAAAGTTCTCAATATG 207 Query 213 CCGTATGTGAAGACCCTCGATGGGATAATCATGTATTTTGTTAACAATGCGGCCACTGTT 272 ||| |||||||||||||||||||||||||||| |||||| ||||| |||||| ||| ||| Sbjct 208 CCGAATGTGAAGACCCTCGATGGGATAATCATATATTTTCTTAACGATGCGGTCACCGTT 267 Query 273 GATGGCTCT--TCG---GT--TC-----AGT-----GT-C-----C-TAGAACTCCTGGG 308 ||||||||| ||| || || ||| || | | ||||||||| ||| Sbjct 268 GATGGCTCTCCTCGCCTGTGGTCTGGCGAGTCTCCAGTACAGTTTCCTAGAACTCCCGGG 327 Query 309 aaaaaaaGTTGCAGG-CTTTTTCAAG-AT-G-TGTCTATTGATT-TGGAA-ACTCCATCT 362 ||||||||||||||| ||| | |||| | | ||||| ||||| || || | ||| ||| Sbjct 328 AAAAAAAGTTGCAGGGCTTCT-CAAGCAGAGGTGTCTCTTGATCGTG-AAGA-TCCGTCT 384 Query 363 CCTAAGTTCTTGAGAAGAGAAGAAAATGGAGGATCATCTAAGCACATTCCTCCGCTATTA 422 ||||||||||||||| |||| |||||||||| | ||||||||||||| ||| |||||| Sbjct 385 CCTAAGTTCTTGAGAGGAGATGAAAATGGAG-A--ATCTAAGCACATTTCTCTTCTATTA 441 Query 423 GCTCTTGG-TGAACTTGAATTCAACAAGGC-TTTTCTGTTGCTTAGCTATATTGGAGGGG 480 ||| |||| ||||||||||||||| ||||| |||| ||||||||| |||| |||||||| Sbjct 442 GCT-TTGGGTGAACTTGAATTCAAGAAGGCGTTTT-TGTTGCTTACCTATCTTGGAGGGA 499 Query 481 AATCCCTGGTTGAGGAGGTTATATCTGGTGATGAGATCAGAAAATGGAAGGATTTGCCAA 540 |||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 500 AATCTCTGGGTGAGG---TTATATCTGGTGATGAGATCAGACAATGGAAGGATTTGCCAA 556 Query 541 TGGTTGAATATGAAGCAGAGGTTTGGAACCGGTTGGGACAGCGTTATTGTCCCCCAAAGG 600 |||||| ||||||| |||| || |||| | || || | || ||| | Sbjct 557 TGGTTGCATATGAA--AGAGCAGTGT----GGTTC--A-AG--TTGG-G-CCA--AAACG 601 Query 601 AGCGAA-GAAGGTCA-CTTGAAGGGGATAGTGGGAAGACTCATTACTATCAATGTCATGT 658 || ||| ||| | || |||||| |||||| ||||||||||||||||||||||||||||| Sbjct 602 AG-GAAAGAATG-CAGCTTGAATCGGATAGCGGGAAGACTCATTACTATCAATGTCATGT 659 Query 659 TGCTCCCGATGGTAGTTACAAATTCAAGGGTTATCTTCTGGAGGACACTGGAACACACCT 718 ||||||||||||||| |||| ||| ||||||||| |||||||| |||||||||||||||| Sbjct 660 TGCTCCCGATGGTAGCTACAGATTAAAGGGTTATTTTCTGGAGAACACTGGAACACACCT 719 Query 719 GCACAAGGTTTTGGGTGATGATAACGTTTTAACCGTCAAATTCGATAAAGTGTTAG-GCG 777 |||||||||||||||||||||||| ||||||||||| | ||||||| || | | | | Sbjct 720 GCACAAGGTTTTGGGTGATGATAATGTTTTAACCGTTAGATTCGATCAATTACCAAAG-G 778 Query 778 AGGAAACCTATTGTAATGACCTTTACTCTACATACAAAGGGATTGCTAAGAATGGTATCA 837 || ||| || ||| | ||| |||||||| |||||||| |||||||||||||||||||| Sbjct 779 AGTCAACATACTGTGACAACCCTTACTCTAAATACAAAGAGATTGCTAAGAATGGTATCA 838 Query 838 TGGTTGGGTTACGCCGTTATCGATTTTTTG 867 ||||||| ||||| ||||||| |||||||| Sbjct 839 TGGTTGGTTTACGTCGTTATCAATTTTTTG 868 Score = 719 bits (389), Expect = 0.0 Identities = 682/816 (84%), Gaps = 49/816 (6%) Strand=Plus/Plus Query 966 TTCAAAGATGGAGGGAAAGAAGAGAAGAAGAA-AGACGCTGCTACAAAGGGAGTGAAATG 1024 ||||||||||||||||||| |||||| ||||| ||| | |||||||| ||||||||| Sbjct 871 TTCAAAGATGGAGGGAAAGCAGAGAAAAAGAAGAGA-AATTCTACAAAGCAAGTGAAATG 929 Query 1025 CTACTTTATACGCACAGACTCGACAGCTTCAAATGATATGCGA-AACCCCTATAT-CTTC 1082 |||||| |||||||| | || ||||| || | ||||||| || || || ||||| ||| Sbjct 930 CTACTTCATACGCACGGGTTCTACAGCATCCAGTGATATG-GAGAATCCTTATATCCTT- 987 Query 1083 TCCGGAAAGTCAATGCATGAAGCGCGTATGCATTTTATGCATGTGAATACTTTGTCATCT 1142 ||||| | |||||| |||||||| ||||||||||||||||||||| |||| ||| | || Sbjct 988 TCCGGGATGTCAATTCATGAAGCTCGTATGCATTTTATGCATGTGCATACATTGCCTTC- 1046 Query 1143 TTGC-CCAACTATATGGCAAGGTTTTCTTTAATTCTGTCAAAGACTAAAACGCTCGAAGT 1201 | | |||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| Sbjct 1047 TCCCGCCAACTATATGGCAAGGTTTTCTTTAATTCTGTCAAAGACAAAAAAGCTTGAAGT 1106 Query 1202 TGACATGACTGGGATTACCTTCGA-GCAAATTGATGATATACACTGCCATGATC-AAGAT 1259 ||||||||||| ||||||| || | |||||| |||||||||||||||||||||| ||| | Sbjct 1107 TGACATGACTGAGATTACCGTC-ATGCAAATCGATGATATACACTGCCATGATCAAAG-T 1164 Query 1260 AATAAGGATGTTCTTGACAAGAATGGGAAACCTTGTATACATTCAGATGGAACTGGCTAC 1319 ||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||||| ||| Sbjct 1165 AATAATGATGTTCTTGATAAGAATGGGAAACCTCGTATACACTCAGATGGAACTGGATAC 1224 Query 1320 ATCTCTGAGGACCTTGCTCGAATGTGTCCAGTT-AATATTTTTAAAGGGAAATCTATGAG 1378 |||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||| Sbjct 1225 ATCTCTGAGGACCTTGCTCGGATGTGTCCA-TTAAATATTTTTAAAGGGAAATCTATGAG 1283 Query 1379 AAGTAACAATATTCAGAGTAAGATTCCAAATATTGAAGGACAGGGACCATGTGGCCAAGA 1438 |||| | | || | | ||| | | | || | ||| |||| |||||| Sbjct 1284 AAGT----A-A--CA-A-T---ATT-C----A--G--GG--A---ACC-TGTGTCCAAGA 1316 Query 1439 GCCGCCTCTGCTGATCCAGTTTCGGATGTTTCATAATGGCTATGCTGTTAAGGGAACTTT 1498 |||||||||||||||||| ||||||||||| || |||||| |||||||||||||| ||| Sbjct 1317 GCCGCCTCTGCTGATCCAAATTCGGATGTTTAATGATGGCTCTGCTGTTAAGGGAA-TTT 1375 Query 1499 T-CTCA-CAAACAAGAAACTTCCTCCTTGGACTGTCCAGGTTCGGCCTTCTATGATCAAG 1556 | || | ||||||||| |||||||| ||| ||||||||||| ||||||||||||||| Sbjct 1376 TCCT-ATTAAACAAGAACCTTCCTCCACAGACCGTCCAGGTTCGACCTTCTATGATCAAG 1434 Query 1557 GTGAATGAAGATCAAACCATGTCAAATTTTAGTACCTTTAACTCCCTGGAGGTAGTCACT 1616 ||| || ||||| ||| ||||||||||||| || |||||||||||||||||||||||| Sbjct 1435 GTGTATAAAGATAAAAATTTGTCAAATTTTAGCACGTTTAACTCCCTGGAGGTAGTCACT 1494 Query 1617 ACAAGTAATCCACCAAGAA-ATGCGAGGCTATC-AAGAAATTTGGTCGCTCTGCTTAGTT 1674 |||||||||||||||| || | |||| |||||| ||||| ||| ||||| ||||| || | Sbjct 1495 ACAAGTAATCCACCAAAAAGA-GCGAAGCTATCGAAGAA-TTTAGTCGCGCTGCTGAGCT 1552 Query 1675 ATGGAGGAGTCCCTAATGACTTCTTTTTGAATATACTGCGGAACACATTGGAAGAGTCCA 1734 |||||||||| || ||||| ||||||||| ||||| ||| ||||| |||||| || | Sbjct 1553 ATGGAGGAGTGCCAAATGATTTCTTTTTGGATATATTGCTCAACACGTTGGAAAAGAAGA 1612 Query 1735 AAACCATATTCTACAGCGAACGTGCTGCGTTTAAAG 1770 |||||||||||| || | |||||| ||| ||||| Sbjct 1613 AAACCATATTCTTCAAAGTACGTGCAGCGGGTAAAG 1648 > AT2G19930.1 | Symbols: | RNA-dependent RNA polymerase family protein | chr2:8607340-8612441 REVERSE LENGTH=3127 Length=3127 Score = 466 bits (252), Expect = 5e-130 Identities = 376/436 (86%), Gaps = 8/436 (2%) Strand=Plus/Plus Query 963 GTTTTCAAAGATGGAGGGAAAGAAGAGAAGAAGAAAGACGC-TGCTACAAAGGGAGTGAA 1021 ||||||||||||||||| ||||| || ||||||||||| | | |||||||| |||||| Sbjct 856 GTTTTCAAAGATGGAGGAAAAGAGGAAAAGAAGAAAGA-TCTTTCTACAAAGAAAGTGAA 914 Query 1022 ATGCTACTTTATACGCACAGACTCGACAGCTTCAAATGATATGCGAAACCCCTATATCTT 1081 |||||||||||||||||| ||||| ||||||| ||||||||| ||| |||||||| || Sbjct 915 ATGCTACTTTATACGCACGGACTCAACAGCTTTTTATGATATGCAAAATCCCTATATTTT 974 Query 1082 CTCCGGAAAGTCAATGCATGAAGCGCGTATGCATTTTATGCATGTGAATACTTTG--TCA 1139 ||||||||||||| ||||||| ||||||||||||||||| ||| || | | || Sbjct 975 AACCGGAAAGTCAATTTATGAAGCTCGTATGCATTTTATGCACGTGCAT-C-GAGCACCA 1032 Query 1140 TCTTTGCCCAACTATATGGCAAGGTTTTCTTTAATTCTGTCAAAGACTAAAACGCTCGAA 1199 ||||| | || ||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1033 ACTTTGGCGAATTATATGGCAAGGTTTTCCTTAATTCTGTCAAAGACTAAAACGCTTGAA 1092 Query 1200 GTTGACATGACTGGGATTACCTTCGAGCAAATTGATGATATACACTGCCATGATCAAGAT 1259 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1093 GTTGACATGACTGGGATTACCTTTGATCAAATTGATGATATACACTGCCATGATCAAGAT 1152 Query 1260 AATAAGGATGTTCTTGACAAGAATGGGAAACCTTGTATACATTCAGATGGAACTGGCTAC 1319 || ||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1153 GGGAAAGATGTTCTTGACAAGAACAAAAAACCTTGCATACATTCAGATGGAACTGGCTAC 1212 Query 1320 ATCTCTGAGGACCTTGCTCGAATGTGTCCAGTTAATATTTTTAAAGGGAAATCTATGAGA 1379 |||||||||||||| ||||| |||||||| | ||||| ||||||||||||| | | ||| Sbjct 1213 ATCTCTGAGGACCTGGCTCGGATGTGTCCCCTAAATATATTTAAAGGGAAATGTCTCAGA 1272 Query 1380 AGTAACAA-TATTCAG 1394 ||| | || ||||||| Sbjct 1273 AGTGA-AAGTATTCAG 1287 Score = 339 bits (183), Expect = 1e-91 Identities = 457/581 (79%), Gaps = 51/581 (9%) Strand=Plus/Plus Query 320 CAGGCTTTTTCAAG-A-TG-TGTCTATTGATT-TGGAAACTCCATCTCCTAAGTTC-TTG 374 |||| || |||||| | | ||||| |||||| | || |||| ||||||||| || ||| Sbjct 294 CAGGGTTCTTCAAGAAGAGATGTCTGTTGATTCT-GATGCTCCTTCTCCTAAG-TCTTTG 351 Query 375 AGAAGAGAAGA-AAATGGAGGATCATCTAAGCACATTCCTCC-GCTATTAGCTCTT-GGT 431 | ||| ||||| ||| |||||||| ||| ||||||||| || ||| ||||| || ||| Sbjct 352 AAAAGTGAAGACAAA-GGAGGATC-TCT--GCACATTCC-CCAGCTGGTAGCT-TTGGGT 405 Query 432 GAACTTGAATTCAACAAGGCT-TTTCTGTTGCTTAGCTATATTGGAGGGGAATCCCTGGT 490 ||||||||||| || |||| | ||| |||| |||||||||||| |||| || | | | Sbjct 406 GAACTTGAATTTAAGAAGG-TGTTTTTGTTACTTAGCTATATTCCAGGGCAA--CAT-G- 460 Query 491 TGAGG--AGGTTATATCTGGTGATGAGATCAGAAAATGGAAGGATTTGCCAATGGTTGAA 548 || || |||||||| ||| ||||||||| ||| ||||| |||||||||||||||||| Sbjct 461 TG-GGCCAGGTTATAACTGCTGATGAGATTAGACTGTGGAAAGATTTGCCAATGGTTGAA 519 Query 549 TATGAAGCAGAGGTTTGGAACCGGTTGGGACAGCGTTATTGTCCCCCAAAGGAGCGAAGA 608 |||||||||| ||||||| |||| ||||| | || ||||||||||| |||||| |||||| Sbjct 520 TATGAAGCAGCGGTTTGGGACCGCTTGGGCCGGCATTATTGTCCCCAAAAGGACCGAAGA 579 Query 609 AGGTCACTTGAAGGGGATAGTGGGAAGACTCATTACTATCAATGTCATGTTGCTCCCGAT 668 | || | || ||||||| |||||||| ||||||||||| ||| ||||||||||| || Sbjct 580 ATGTTGC---AATGGGATAGCGGGAAGACCCATTACTATCAGTGTAATGTTGCTCCCAAT 636 Query 669 GGTAGTTACAAATTCAAGG--------G-T-T--A------TCTTCTGGAGGACACTGGA 710 ||||| |||| |||||||| | | | | |||||| || |||||||| Sbjct 637 GGTAGCTACACATTCAAGGTTCTTTCAGCTCTTCAAGGCCCTCTTCTTGAACACACTGGA 696 Query 711 ACACACCTGCACAAGGTTTTGGGTGATGATAACGTTTTAACCGTCAAATTCGATAAAGTG 770 |||||| |||||||||| |||||||||||||| ||||||||||||||||||| | || Sbjct 697 ACACACTTGCACAAGGTCTTGGGTGATGATAATGTTTTAACCGTCAAATTCGCGGATGTC 756 Query 771 TTAGGCGAGG--A--AACCTATTGTAATGACCTTTACTCTACATACAAAGGGATTGCTAA 826 || || | ||| ||| | | ||||| ||||| |||||||||||||||||| || Sbjct 757 C-AGAAAAGTTCATCAACATATAGCATTGACCATTACTTTACATACAAAGGGATTGCCAA 815 Query 827 GAATGGTATCATGGTTGGGTTACGCCGTTATCGATTTTTTG 867 ||| ||||||||| |||| ||||| ||||||| |||||||| Sbjct 816 GAACGGTATCATGATTGGTTTACGTCGTTATCAATTTTTTG 856 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 141370445374 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5