BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931401
Length=1786
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19900.1 | Symbols: ATNADP-ME1, NADP-ME1 | NADP-malic enzyme... 2970 0.0
> AT2G19900.1 | Symbols: ATNADP-ME1, NADP-ME1 | NADP-malic enzyme
1 | chr2:8591899-8595478 REVERSE LENGTH=2028
Length=2028
Score = 2970 bits (1608), Expect = 0.0
Identities = 1723/1780 (97%), Gaps = 2/1780 (0%)
Strand=Plus/Plus
Query 3 TTCATTGATCCTTTCAAGATGGAGAAAGTGACCAACTCAGATTTGAAATCCTCTGTTGAT 62
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 58 TTCATTGATCCTTTCAAGATGGAGAAAGTGACCAACTCAGACTTGAAATCCTCTGTTGAT 117
Query 63 GGTGGCGTTATTGATGTGTATGGAGAAGATTCAGCCACCATTGAGCACAACATAACTCCT 122
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GGTGGCGTTGTTGATGTGTATGGAGAAGATTCAGCCACCATTGAGCACAACATAACTCCT 177
Query 123 TGGTCTCTCTCTGTTTCTAGTGGATATTCATTGCTGAGAGATCCTCGCTACAACAAAGGA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGGTCTCTCTCTGTTTCTAGTGGATATTCATTGCTGAGAGATCCTCGCTACAACAAAGGA 237
Query 183 CTTGCTTTCACTGAGAAAGAGAGAGAGACGCACTACTTGCGTGGTCTTCTTCCTCCAGTT 242
|||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||
Sbjct 238 CTTGCTTTCACTGAGAAAGAGAGAGACACTCATTACTTGCGTGGTCTTCTCCCTCCAGTT 297
Query 243 GTTCTTGATCAAAAGCTTCAGGAGAAGAGGCTGATGAGCAATATCCGACAATATCAATTT 302
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 298 GTTCTTGATCAAAAGCTTCAGGAGAAGAGGCTGTTGAACAATATCCGACAATATCAATTC 357
Query 303 CCATTACAAAAGTACATGGCTCTGACAGAACTTCAGGAAAGAAACGAGAGACTGTTTTAT 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CCATTACAAAAGTACATGGCTCTGACAGAACTTCAGGAAAGAAACGAGAGACTGTTTTAC 417
Query 363 AAGCTCTTGATAGATAATGTTGAGGAGCTTCTTCCTATTGTTTATACTCCAACTGTTGGT 422
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 418 AAGCTATTGATAGATAATGTTGAGGAGCTACTTCCTATTGTTTATACTCCAACTGTTGGT 477
Query 423 GAAGCTTGTCAGAAATTTGGAAGTATTTTCAGGCGACCTCAGGGTTTATTCATCAGTTTA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GAAGCTTGTCAGAAATTTGGAAGTATTTTCAGGCGACCTCAGGGTTTATTCATCAGTTTA 537
Query 483 AAAGACAAGGGAAAGATTCTAGATGTGTTAAAGAACTGGCCTGAAAGGAATATACAAGTT 542
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 538 AAAGACAAGGGAAAGATTCTAGATGTGTTAAAGAACTGGCCTGAAAGGAACATACAGGTT 597
Query 543 ATTGTTGTTACTGATGGTGAAAGGATCTTGGGATTAGGAGATCTTGGATGTCAGGGGATG 602
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 598 ATTGTTGTTACTGACGGTGAAAGGATTTTAGGATTAGGAGATCTTGGATGTCAGGGGATG 657
Query 603 GGTATACCGGTTGGTAAATTGGCGTTATATTCAGCACTTGGAGGCGTTCGTCCTTCTGCG 662
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 658 GGTATACCGGTTGGTAAGTTGGCGTTATATTCAGCACTTGGAGGTGTTCGTCCTTCAGCG 717
Query 663 TGTTTACCTGTCACCATTGATGTGGGAACAAACAATGAGAAACTGTTGAATGATGAGTTC 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGTTTACCTGTCACCATTGATGTGGGAACAAACAATGAGAAACTGTTGAATGATGAGTTC 777
Query 723 TACATAGGACTCAGGCAAAAGAGAGCAACGGGACAGGAATATAGCGAACTCTTGAATGAA 782
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 778 TACATAGGACTCAGGCAAAAGAGAGCAACGGGACAGGAATATAGTGAACTCTTGAATGAA 837
Query 783 TTCATGAGTGCTGTGAAACAGAACTATGGCGAAAAAGTTCTTATTCAGTTTGAAGATTTT 842
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 838 TTCATGAGTGCTGTGAAACAGAACTATGGTGAAAAAGTTCTTATTCAGTTTGAAGATTTT 897
Query 843 GCTAATCATAATGCCTTTGAGTTGCTTGCAAAATACCGCGATACTCATCTCGTCTTCAAC 902
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 898 GCTAATCATAATGCCTTTGAGTTGCTTGCAAAATACAGCGATACTCATCTCGTCTTCAAC 957
Query 903 GATGATATACAGGGGACAGCATCAGTTGTTTTAGCGGGATTAGTTTCCGCACAGAAGTTA 962
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 958 GATGATATACAGGGGACAGCATCAGTTGTTTTAGCAGGATTAGTTTCCGCACAGAAGTTA 1017
Query 963 ACAAATAGTCCACTTGCAGAGAACACCTTCCTCTTTCTTGGTGCTGGTGAAGCTGGAACT 1022
|| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1018 ACGAATAGCCCACTTGCAGAGCATACCTTCCTCTTTCTTGGTGCTGGTGAAGCTGGAACT 1077
Query 1023 GGAATAGCAGAACTCATAGCTCTCTATATATCAAAACAGATGAATGGTTCGGTAGAGGAA 1082
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1078 GGAATAGCAGAACTCATAGCTCTCTATATGTCAAAACAGATGAATGCTTCGGTAGAGGAA 1137
Query 1083 AGCCGCAAGAAAATCTGGCTTGTTGATTCCAAGGGACTGATTGTTAACTCCCGCAAAGAT 1142
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1138 AGCCGCAAGAAAATCTGGCTTGTTGATTCCAAGGGATTGATTGTTAACTCCCGCAAAGAT 1197
Query 1143 TCACTTCAAGCCTTCAAGAAACCATGGGCTCATGAACATGAACCAGTCAAAGACCTCTTA 1202
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TCACTTCAAGACTTTAAGAAACCATGGGCTCATGAACATGAACCAGTCAAAGACCTCTTA 1257
Query 1203 GGTGCTATCAAGGCAATAAAACCGACTGTTCTGATTGGATCGTCTGGCGTTGGACGGTCT 1262
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1258 GGTGCTATCAAGGCAATAAAACCGACTGTTCTGATTGGATCTTCTGGCGTTGGACGGTCT 1317
Query 1263 TTTACAAAAGAAGTGATAGAAGCCATGTCCTCCATTAATGAGAGACCACTGATAATGGCT 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TTTACAAAAGAAGTGATAGAAGCCATGTCCTCCATTAATGAGAGACCACTGATAATGGCT 1377
Query 1323 CTCTCTAACCCAACAACACAATCAGAATGTACAGCTGAAGAAGCTTATACTTGGAGTAAG 1382
||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1378 CTCTCTAACCCCACAACACAATCTGAATGTACAGCCGAAGAAGCTTATACTTGGAGTAAG 1437
Query 1383 GGTCGTGCCATTTTCGCAAGTGGAAGTCCTTTTGATCCAGTGGAGTATGAAGGAAATGTG 1442
|| ||||||||||| || |||||||| |||||||||||||| |||||||||||||| |||
Sbjct 1438 GGCCGTGCCATTTTTGCTAGTGGAAGCCCTTTTGATCCAGTTGAGTATGAAGGAAAGGTG 1497
Query 1443 TTTGTATCGACACAGGCAAACAATGCGTACATATTCCCGGGTTTTGGACTTGGTTTGGTT 1502
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1498 TTTGTATCTACACAGGCGAACAATGCGTACATATTCCCGGGCTTTGGACTTGGTTTGGTT 1557
Query 1503 ATCTCTGGAGCAATACGGGTACATGACGATATGCTTCTAGCTGCTGCTGAGGCATTAGCT 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 ATCTCTGGAGCAATACGGGTACATGACGATATGCTTCTAGCTGCTGCTGAGGCATTAGCT 1617
Query 1563 GGACAAGTAAGCGAAGAGAACTATGAGAAAGGGATGATATATCCTTCATTCTCTGCCATC 1622
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1618 GGACAAGTAAGCAAAGAGAACTATGAGAAAGGAATGATATATCCTTCATTCTCTTCCATC 1677
Query 1623 CGGAAAATATCAGCTCATATTGCAGCCAATGTAGCAACTAAGGCATATGAACTAGG-TCT 1681
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | |
Sbjct 1678 CGGAAAATATCAGCTCAGATTGCAGCCAATGTAGCAACTAAGGCGTATGAACTAGGAT-T 1736
Query 1682 GGCGGGGCGGCTTCCACGGCCGAAAGATATAGTCAAGTGTGCAGAGAGTAGCATGTACAG 1741
||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1737 GGCAGGGCGGCTTCCACGGCCGAAAGATATTGTCAAATGTGCAGAGAGTAGCATGTACAG 1796
Query 1742 CCCCACCTACCGTCTCTACCGTTGAAAGTTGAAACTCAAG 1781
|||||| |||||||||||||||||||||||||||||||||
Sbjct 1797 CCCCACATACCGTCTCTACCGTTGAAAGTTGAAACTCAAG 1836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88352959200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5